Variant report

Variant	rs6661932
Chromosome Location	chr1:152896734-152896735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:152843532..152844154-chr1:152896678..152897196,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10494282	0.94[EUR][1000 genomes]
rs10788849	0.98[ASN][1000 genomes]
rs11576882	0.95[EUR][1000 genomes]
rs11577384	0.98[EUR][1000 genomes]
rs11578914	0.96[EUR][1000 genomes]
rs11581802	0.93[EUR][1000 genomes]
rs11586313	0.89[JPT][hapmap]
rs11587269	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs11588463	0.98[EUR][1000 genomes]
rs11590369	0.98[EUR][1000 genomes]
rs12041126	0.90[EUR][1000 genomes]
rs1415972	0.83[CEU][hapmap]
rs17627288	0.94[EUR][1000 genomes]
rs2050673	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2050674	0.96[ASN][1000 genomes]
rs2068678	0.97[EUR][1000 genomes]
rs2339386	0.96[EUR][1000 genomes]
rs28924721	0.83[CEU][hapmap]
rs4620471	0.98[EUR][1000 genomes]
rs4845497	0.98[ASN][1000 genomes]
rs55959888	0.96[EUR][1000 genomes]
rs56241316	0.98[EUR][1000 genomes]
rs56335979	0.86[EUR][1000 genomes]
rs58298199	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61815707	0.97[EUR][1000 genomes]
rs61815711	0.90[EUR][1000 genomes]
rs61815713	0.92[EUR][1000 genomes]
rs61815714	0.94[EUR][1000 genomes]
rs6663448	0.97[EUR][1000 genomes]
rs7541328	0.98[EUR][1000 genomes]
rs7551014	0.96[EUR][1000 genomes]
rs756303	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757755	chr1:152472839-152898153	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv2758970	chr1:152472839-152898153	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv427786	chr1:152572990-152898153	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1013433	chr1:152619305-153262215	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv535170	chr1:152619305-153262215	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv1001834	chr1:152648853-153279143	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv547899	chr1:152672005-153245082	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
8	nsv831592	chr1:152815054-152997162	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv998873	chr1:152869127-152975258	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152896400-152896800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:152896400-152897000	Enhancers	HMEC	breast
3	chr1:152896600-152897000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:152896600-152897000	Enhancers	GM12878-XiMat	blood

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