Variant report

Variant	rs11588176
Chromosome Location	chr1:166917857-166917858
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10918599	0.99[ASN][1000 genomes]
rs10918600	0.97[ASN][1000 genomes]
rs10918603	0.92[ASN][1000 genomes]
rs11576904	0.89[ASN][1000 genomes]
rs11579987	0.95[ASN][1000 genomes]
rs2038020	0.88[ASN][1000 genomes]
rs2038022	0.88[ASN][1000 genomes]
rs2072742	0.92[ASN][1000 genomes]
rs2142615	0.97[ASN][1000 genomes]
rs2235184	0.88[ASN][1000 genomes]
rs2294220	0.95[ASN][1000 genomes]
rs2312675	0.97[ASN][1000 genomes]
rs61815130	0.97[ASN][1000 genomes]
rs61815132	0.96[ASN][1000 genomes]
rs6427047	0.98[ASN][1000 genomes]
rs6427048	0.92[ASN][1000 genomes]
rs6677644	0.92[ASN][1000 genomes]
rs742048	0.97[ASN][1000 genomes]
rs7520897	0.91[ASN][1000 genomes]
rs7545806	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166913000-166922200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr1:166913400-166922000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:166914000-166923000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:166915400-166923800	Weak transcription	Dnd41	blood
5	chr1:166916400-166919200	Enhancers	HSMMtube	muscle
6	chr1:166917000-166922400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:166917200-166918000	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr1:166917200-166922600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:166917400-166918200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:166917400-166918400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:166917400-166918400	Weak transcription	Brain Germinal Matrix	brain
12	chr1:166917400-166919000	Weak transcription	Fetal Brain Male	brain
13	chr1:166917400-166919200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
14	chr1:166917400-166919200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:166917400-166919600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr1:166917400-166919800	Enhancers	Brain Angular Gyrus	brain
17	chr1:166917400-166919800	Enhancers	Brain Substantia Nigra	brain
18	chr1:166917400-166920000	Enhancers	Brain Cingulate Gyrus	brain
19	chr1:166917400-166920400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:166917400-166922800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:166917600-166918800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:166917600-166919000	Weak transcription	Colon Smooth Muscle	Colon
23	chr1:166917600-166919400	Enhancers	Brain Hippocampus Middle	brain
24	chr1:166917600-166919600	Enhancers	Brain Anterior Caudate	brain
25	chr1:166917600-166920400	Weak transcription	Fetal Heart	heart
26	chr1:166917600-166921200	Weak transcription	HSMM	muscle
27	chr1:166917600-166921400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr1:166917800-166919000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
29	chr1:166917800-166919000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr1:166917800-166919600	Weak transcription	Brain Inferior Temporal Lobe	brain

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