Variant report

Variant	rs2142615
Chromosome Location	chr1:166922731-166922732
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10800276	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs10918599	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10918600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10918603	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10918607	0.88[CEU][hapmap]
rs11576904	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11579987	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11588176	0.97[ASN][1000 genomes]
rs2038020	0.87[ASN][1000 genomes]
rs2038022	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2072742	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2235184	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2280995	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs2294220	0.94[ASN][1000 genomes]
rs2312675	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4657613	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs61815130	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61815132	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6427047	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6427048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6660048	0.88[CEU][hapmap]
rs6669886	0.81[CHB][hapmap]
rs6677644	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6695609	0.88[CEU][hapmap];0.87[AMR][1000 genomes]
rs742048	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7520897	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7545806	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166914000-166923000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:166915400-166923800	Weak transcription	Dnd41	blood
3	chr1:166917400-166922800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:166919000-166922800	Enhancers	Colon Smooth Muscle	Colon
5	chr1:166919400-166936400	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:166919600-166929400	Weak transcription	Thymus	Thymus
7	chr1:166920000-166928200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:166921400-166927200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:166921400-166927600	Weak transcription	Brain Anterior Caudate	brain
10	chr1:166921600-166935800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:166921800-166924000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr1:166921800-166924000	Weak transcription	Brain Angular Gyrus	brain
13	chr1:166922000-166933800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:166922200-166923000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr1:166922200-166923000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:166922200-166927800	Weak transcription	HSMMtube	muscle
17	chr1:166922400-166923000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:166922400-166927600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:166922600-166925200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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