Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10918599	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10918600	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10918603	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11576904	0.83[ASN][1000 genomes]
rs11579987	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11588176	0.92[ASN][1000 genomes]
rs2038020	0.83[ASN][1000 genomes]
rs2038022	0.83[ASN][1000 genomes]
rs2142615	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2235184	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2294220	0.89[ASN][1000 genomes]
rs2312675	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4657613	0.81[EUR][1000 genomes]
rs61815130	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61815132	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6427047	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6427048	1.00[ASN][1000 genomes]
rs6677644	1.00[ASN][1000 genomes]
rs6695609	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs742048	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7520897	0.99[ASN][1000 genomes]
rs7545806	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166919400-166936400	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:166921600-166935800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:166922000-166933800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:166922800-166930200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:166926400-166932400	Weak transcription	Dnd41	blood
6	chr1:166926800-166934000	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:166927200-166934000	Weak transcription	GM12878-XiMat	blood
8	chr1:166927200-166937200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:166927400-166941600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:166927600-166940200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:166927800-166940000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:166928600-166932400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:166929400-166930200	Enhancers	Fetal Kidney	kidney

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