Variant report

Variant	rs61815132
Chromosome Location	chr1:166920911-166920912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10800276	0.87[EUR][1000 genomes]
rs10918599	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10918600	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10918603	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11576904	0.87[ASN][1000 genomes]
rs11579987	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11588176	0.96[ASN][1000 genomes]
rs2038020	0.86[ASN][1000 genomes]
rs2038022	0.86[ASN][1000 genomes]
rs2072742	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2142615	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2235184	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2294220	0.93[ASN][1000 genomes]
rs2312675	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4657613	0.88[EUR][1000 genomes]
rs61815130	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6427047	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6427048	0.94[ASN][1000 genomes]
rs6677644	0.94[ASN][1000 genomes]
rs6695609	0.86[AMR][1000 genomes]
rs742048	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7520897	0.93[ASN][1000 genomes]
rs7545806	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166913000-166922200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr1:166913400-166922000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:166914000-166923000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:166915400-166923800	Weak transcription	Dnd41	blood
5	chr1:166917000-166922400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:166917200-166922600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:166917400-166922800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:166917600-166921200	Weak transcription	HSMM	muscle
9	chr1:166917600-166921400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:166918400-166921600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr1:166918400-166921800	Enhancers	Brain Germinal Matrix	brain
12	chr1:166918400-166922600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:166918800-166921600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:166918800-166922000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:166918800-166922400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:166919000-166921000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr1:166919000-166921000	Enhancers	Stomach Smooth Muscle	stomach
18	chr1:166919000-166922800	Enhancers	Colon Smooth Muscle	Colon
19	chr1:166919400-166936400	Weak transcription	Brain Hippocampus Middle	brain
20	chr1:166919600-166921400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr1:166919600-166922200	Enhancers	Rectal Smooth Muscle	rectum
22	chr1:166919600-166929400	Weak transcription	Thymus	Thymus
23	chr1:166919800-166921400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr1:166919800-166921400	Weak transcription	Brain Angular Gyrus	brain
25	chr1:166919800-166922400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr1:166920000-166921600	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr1:166920000-166922000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr1:166920000-166928200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr1:166920200-166921200	Weak transcription	Brain Anterior Caudate	brain
30	chr1:166920400-166921600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr1:166920400-166921600	Enhancers	Fetal Muscle Leg	muscle
32	chr1:166920400-166922000	Enhancers	H1 Cell Line	embryonic stem cell
33	chr1:166920400-166922000	Enhancers	Fetal Heart	heart
34	chr1:166920600-166921000	Weak transcription	Fetal Brain Male	brain
35	chr1:166920600-166921600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr1:166920600-166922200	Enhancers	HSMMtube	muscle
37	chr1:166920800-166921600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr1:166920800-166922200	Enhancers	HUES48 Cell Line	embryonic stem cell

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