Variant report

Variant	rs11590093
Chromosome Location	chr1:95421444-95421445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95420137..95422269-chr1:95458880..95460742,2	MCF-7	breast:
2	chr1:95421294..95422919-chr1:95433531..95435753,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11800399	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11807661	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11808784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6704409	0.95[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9432619	0.98[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9432620	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9432622	0.98[AFR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11590093	RWDD3	cis	brain	BrainEAC

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95410600-95421600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:95413200-95427600	Weak transcription	Colonic Mucosa	Colon
3	chr1:95415400-95422400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr1:95415800-95428400	Weak transcription	Lung	lung
5	chr1:95416000-95427400	Weak transcription	A549	lung
6	chr1:95417800-95424600	Enhancers	HepG2	liver
7	chr1:95418800-95421800	Enhancers	Ovary	ovary
8	chr1:95419200-95421800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:95419200-95422000	Enhancers	Fetal Stomach	stomach
10	chr1:95419400-95421800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:95419400-95421800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:95419400-95421800	Enhancers	Fetal Muscle Leg	muscle
13	chr1:95419400-95421800	Enhancers	Left Ventricle	heart
14	chr1:95419400-95421800	Enhancers	Stomach Smooth Muscle	stomach
15	chr1:95419400-95422000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:95419400-95422000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:95419400-95422000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr1:95419400-95422000	Enhancers	Colon Smooth Muscle	Colon
19	chr1:95419400-95422000	Enhancers	Rectal Smooth Muscle	rectum
20	chr1:95419400-95422000	Enhancers	HUVEC	blood vessel
21	chr1:95419400-95422400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:95419400-95422800	Enhancers	Duodenum Mucosa	Duodenum
23	chr1:95419600-95421600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr1:95419600-95423200	Weak transcription	Dnd41	blood
25	chr1:95419800-95421600	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr1:95419800-95421800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr1:95419800-95422000	Enhancers	Fetal Intestine Small	intestine
28	chr1:95420000-95421800	Enhancers	Adipose Nuclei	Adipose
29	chr1:95420000-95421800	Enhancers	Right Atrium	heart
30	chr1:95420000-95421800	Enhancers	Right Ventricle	heart
31	chr1:95420000-95422000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:95420000-95422000	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr1:95420200-95421600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr1:95420400-95422800	Enhancers	Liver	Liver
35	chr1:95420400-95423000	Enhancers	Fetal Heart	heart
36	chr1:95420400-95424000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr1:95420800-95421600	Enhancers	Fetal Muscle Trunk	muscle
38	chr1:95420800-95426000	Weak transcription	Placenta	Placenta
39	chr1:95421000-95421600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:95421000-95421600	Enhancers	Pancreas	Pancrea
41	chr1:95421000-95421600	Enhancers	Placenta Amnion	Placenta Amnion
42	chr1:95421000-95422000	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr1:95421000-95422000	Enhancers	Fetal Intestine Large	intestine
44	chr1:95421000-95422000	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr1:95421200-95421600	Enhancers	Fetal Thymus	thymus
46	chr1:95421200-95421800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr1:95421200-95421800	Enhancers	HSMMtube	muscle
48	chr1:95421200-95422000	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr1:95421200-95422000	Enhancers	Small Intestine	intestine
50	chr1:95421200-95422000	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links