Variant report

Variant	rs11808784
Chromosome Location	chr1:95400729-95400730
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95399234..95401768-chr1:95403822..95405346,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11590093	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11800399	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11807661	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6704409	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9432619	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9432620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9432622	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95393400-95401800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:95393600-95404000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:95394000-95415600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:95395400-95400800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:95395400-95401800	Weak transcription	Brain Anterior Caudate	brain
6	chr1:95395400-95404000	Weak transcription	Brain Angular Gyrus	brain
7	chr1:95395400-95410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:95395600-95400800	Weak transcription	Brain Substantia Nigra	brain
9	chr1:95395600-95400800	Weak transcription	Fetal Kidney	kidney
10	chr1:95395600-95401200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:95395600-95401400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr1:95395600-95401400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:95395600-95401400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr1:95395600-95401800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr1:95395600-95401800	Weak transcription	Colon Smooth Muscle	Colon
16	chr1:95395600-95401800	Weak transcription	Lung	lung
17	chr1:95395600-95401800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr1:95395600-95401800	Weak transcription	NHLF	lung
19	chr1:95395600-95402000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:95395600-95403400	Weak transcription	Right Atrium	heart
21	chr1:95395600-95403800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:95395600-95403800	Weak transcription	Gastric	stomach
23	chr1:95395600-95403800	Weak transcription	Right Ventricle	heart
24	chr1:95395600-95404200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:95395600-95407000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr1:95395600-95412400	Weak transcription	Colonic Mucosa	Colon
27	chr1:95395600-95412400	Weak transcription	Pancreas	Pancrea
28	chr1:95395600-95416400	Weak transcription	Brain Hippocampus Middle	brain
29	chr1:95395800-95401400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr1:95395800-95401800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr1:95395800-95408600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr1:95396000-95401200	Weak transcription	Fetal Heart	heart
33	chr1:95396000-95403200	Weak transcription	Small Intestine	intestine
34	chr1:95396000-95407800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr1:95396200-95401800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr1:95396200-95401800	Weak transcription	Fetal Lung	lung
37	chr1:95396600-95401200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr1:95397400-95401800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr1:95398800-95401800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr1:95399200-95401400	Enhancers	Brain Germinal Matrix	brain
41	chr1:95399200-95401400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr1:95399200-95404000	Weak transcription	Adipose Nuclei	Adipose
43	chr1:95399400-95401400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:95399400-95401400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr1:95399400-95401600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr1:95399400-95401600	Weak transcription	Aorta	Aorta
47	chr1:95399400-95401800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:95399400-95401800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr1:95399400-95401800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr1:95399400-95402400	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links