Variant report

Variant	rs11590145
Chromosome Location	chr1:225007842-225007843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10915720	1.00[AFR][1000 genomes]
rs10915741	1.00[AFR][1000 genomes]
rs10915754	1.00[AFR][1000 genomes]
rs11585297	1.00[ASW][hapmap]
rs16853978	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16858926	1.00[ASW][hapmap];0.83[TSI][hapmap];1.00[AFR][1000 genomes]
rs2018908	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs56267629	1.00[AFR][1000 genomes]
rs61852092	1.00[AFR][1000 genomes]
rs920133	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11590145	DUSP10	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225007000-225008200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:225007600-225011400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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