Variant report

Variant	rs16858926
Chromosome Location	chr1:225156457-225156458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10915720	1.00[AFR][1000 genomes]
rs10915741	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10915754	1.00[AFR][1000 genomes]
rs11577104	1.00[AFR][1000 genomes]
rs11590145	1.00[AFR][1000 genomes]
rs12740067	0.89[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs1480101	1.00[CEU][hapmap]
rs16853978	1.00[AFR][1000 genomes]
rs1842332	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs56150737	0.83[AMR][1000 genomes]
rs56267629	1.00[AFR][1000 genomes]
rs61849800	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61849836	1.00[AFR][1000 genomes]
rs61852092	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7536245	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757773	chr1:225087924-225253274	Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2759001	chr1:225087924-225253274	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1005824	chr1:225114654-225158871	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv3438976	chr1:225133567-225248753	Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1804634	chr1:225137134-225206826	Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225138800-225163800	Weak transcription	Hela-S3	cervix
2	chr1:225140000-225158400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:225141400-225158800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:225141400-225162600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:225141600-225159000	Weak transcription	Ovary	ovary
6	chr1:225141800-225159400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:225141800-225160200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr1:225142800-225158400	Weak transcription	NH-A	brain
9	chr1:225142800-225162200	Weak transcription	Fetal Kidney	kidney
10	chr1:225142800-225164400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:225143400-225161800	Weak transcription	A549	lung
12	chr1:225145200-225160600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:225145600-225158800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:225147000-225157200	Strong transcription	K562	blood
15	chr1:225147400-225157800	Weak transcription	HepG2	liver
16	chr1:225148400-225158200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:225148800-225158000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr1:225150400-225157200	Weak transcription	Pancreas	Pancrea
19	chr1:225150400-225157600	Weak transcription	Fetal Intestine Large	intestine
20	chr1:225150400-225160600	Weak transcription	Fetal Intestine Small	intestine
21	chr1:225150400-225167200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr1:225150400-225171200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:225151600-225157200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:225152800-225157200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:225153200-225157000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr1:225153200-225158000	Weak transcription	Liver	Liver
27	chr1:225153400-225157400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:225153400-225160800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr1:225153600-225158600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr1:225154200-225157800	Weak transcription	HMEC	breast
31	chr1:225154800-225157400	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr1:225155200-225157600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr1:225155200-225157600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:225155600-225156600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:225156000-225157000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:225156000-225157400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr1:225156200-225157400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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