Variant report

Variant	rs56150737
Chromosome Location	chr1:225274851-225274852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225268034..225271862-chr1:225273002..225275379,3	K562	blood:

Variant related genes	Relation type
ENSG00000185842	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10799296	0.82[EUR][1000 genomes]
rs10915791	0.82[EUR][1000 genomes]
rs10915797	0.82[EUR][1000 genomes]
rs10915798	0.82[EUR][1000 genomes]
rs10915802	0.82[EUR][1000 genomes]
rs10915803	0.82[EUR][1000 genomes]
rs11577306	0.80[ASN][1000 genomes]
rs11578729	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11580638	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11582482	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11583802	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11584486	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11585032	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11585124	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11586783	0.80[ASN][1000 genomes]
rs12064555	0.82[EUR][1000 genomes]
rs12068189	0.82[EUR][1000 genomes]
rs12068193	0.82[EUR][1000 genomes]
rs12077485	0.82[EUR][1000 genomes]
rs12077966	0.82[EUR][1000 genomes]
rs12090119	0.82[EUR][1000 genomes]
rs12097990	0.82[EUR][1000 genomes]
rs12402229	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12403292	0.82[ASN][1000 genomes]
rs12403752	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12403778	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12406388	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12408302	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12410126	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12410491	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12411172	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12411174	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12729289	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12733373	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12733733	0.82[EUR][1000 genomes]
rs12736406	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12740067	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12740354	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12754116	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12754230	0.82[EUR][1000 genomes]
rs12758681	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12758819	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1466468	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1480101	0.81[EUR][1000 genomes]
rs1480107	0.82[EUR][1000 genomes]
rs16844054	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16844408	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16858926	0.83[AMR][1000 genomes]
rs1842332	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1847906	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1847907	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2035302	0.82[EUR][1000 genomes]
rs34051059	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34248528	0.82[EUR][1000 genomes]
rs34256167	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34304596	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34305765	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34436845	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34468096	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34517951	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34530213	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34737903	0.80[ASN][1000 genomes]
rs34764920	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34766551	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34778535	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34937935	0.80[ASN][1000 genomes]
rs35150136	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35161243	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35181350	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35553993	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35852721	0.83[ASN][1000 genomes]
rs35948433	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36053633	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4319288	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4623662	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4653413	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4653607	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4653608	0.82[EUR][1000 genomes]
rs4653610	0.82[EUR][1000 genomes]
rs55680010	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55738724	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55770610	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56280792	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57650955	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61849800	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61849836	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61851475	0.81[ASN][1000 genomes]
rs61851478	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61851479	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61851481	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61851489	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61851518	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61851519	0.82[EUR][1000 genomes]
rs61851520	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs661753	0.80[ASN][1000 genomes]
rs6666735	0.81[EUR][1000 genomes]
rs675571	0.80[ASN][1000 genomes]
rs72748625	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7536245	0.85[EUR][1000 genomes]
rs7541259	0.82[EUR][1000 genomes]
rs7555756	0.82[EUR][1000 genomes]
rs9887766	0.82[EUR][1000 genomes]
rs9887975	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873225	chr1:225162060-225373936	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv549262	chr1:225191852-225319898	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv549263	chr1:225202426-225319898	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv998899	chr1:225210813-225496353	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv945671	chr1:225242969-225311101	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225256400-225277400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:225261200-225279200	Weak transcription	Pancreas	Pancrea
3	chr1:225274200-225275400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr1:225274600-225275400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:225274600-225275800	ZNF genes & repeats	Fetal Intestine Large	intestine
6	chr1:225274600-225276000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:225274800-225275600	ZNF genes & repeats	Ovary	ovary
8	chr1:225274800-225275800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr1:225274800-225275800	ZNF genes & repeats	Liver	Liver

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