The 2.0 version of rSNPBase

Variant report

Variant rs11590678
Chromosome Location chr1:220981449-220981450
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220961000-220982200 Weak transcription Brain Substantia Nigra brain
2 chr1:220961400-220983800 Weak transcription Esophagus oesophagus
3 chr1:220961600-220983600 Weak transcription Pancreas Pancrea
4 chr1:220961800-220981600 Weak transcription Fetal Muscle Trunk muscle
5 chr1:220961800-220983800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr1:220965200-220985400 Weak transcription Aorta Aorta
7 chr1:220965400-220982200 Weak transcription Brain Inferior Temporal Lobe brain
8 chr1:220965600-220983600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:220965800-220983800 Weak transcription Fetal Lung lung
10 chr1:220966400-220996000 Strong transcription Monocytes-CD14+_RO01746 blood
11 chr1:220966600-220982400 Strong transcription Primary monocytes fromperipheralblood blood
12 chr1:220966800-220985200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr1:220967600-220983800 Weak transcription Psoas Muscle Psoas
14 chr1:220970400-220981600 Weak transcription ES-I3 Cell Line embryonic stem cell
15 chr1:220970400-220985800 Weak transcription Duodenum Mucosa Duodenum
16 chr1:220970800-220981600 Weak transcription Brain Hippocampus Middle brain
17 chr1:220971200-220986400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
18 chr1:220971200-220991400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr1:220972200-220983800 Weak transcription Rectal Mucosa Donor 31 rectum
20 chr1:220972200-220984000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr1:220972800-220987600 Weak transcription Fetal Brain Male brain
22 chr1:220973200-220981800 Weak transcription Left Ventricle heart
23 chr1:220973200-220983800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:220973200-220991800 Weak transcription Brain Anterior Caudate brain
25 chr1:220973400-221000200 Weak transcription Placenta Placenta
26 chr1:220973600-220983800 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr1:220974000-220992800 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr1:220974200-220986800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:220974200-220991200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr1:220975200-220992000 Weak transcription Brain Germinal Matrix brain
31 chr1:220975400-220981800 Weak transcription Right Ventricle heart
32 chr1:220975600-220981800 Weak transcription Fetal Adrenal Gland Adrenal Gland
33 chr1:220975600-220983800 Weak transcription Skeletal Muscle Male skeletal muscle
34 chr1:220975600-220983800 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr1:220975600-220988000 Weak transcription Brain Angular Gyrus brain
36 chr1:220975600-220991400 Weak transcription Brain Cingulate Gyrus brain
37 chr1:220975800-220983800 Weak transcription Lung lung
38 chr1:220976200-220983600 Weak transcription Primary T regulatory cells fromperipheralblood blood
39 chr1:220976400-220988000 Weak transcription Spleen Spleen
40 chr1:220977400-220982400 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr1:220977600-220983800 Weak transcription Colonic Mucosa Colon
42 chr1:220977800-220981600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr1:220977800-220982000 Weak transcription Stomach Smooth Muscle stomach
44 chr1:220978200-220983600 Strong transcription Adipose Nuclei Adipose
45 chr1:220978400-220991200 Weak transcription iPS-15b Cell Line embryonic stem cell
46 chr1:220978600-220981600 Weak transcription iPS-18 Cell Line embryonic stem cell
47 chr1:220979000-220983800 Weak transcription H1 Cell Line embryonic stem cell
48 chr1:220979400-220989400 Strong transcription Primary neutrophils fromperipheralblood blood
49 chr1:220979600-220982200 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
50 chr1:220979600-220983600 Weak transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015