Variant report

Variant	rs12124030
Chromosome Location	chr1:220975414-220975415
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220955910..220958578-chr1:220974519..220976128,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10495152	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10863567	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118609	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118611	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118615	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11118616	0.83[ASN][1000 genomes]
rs11118619	0.82[ASN][1000 genomes]
rs11590678	0.86[ASN][1000 genomes]
rs12057411	0.83[ASN][1000 genomes]
rs12073837	0.82[ASN][1000 genomes]
rs12089958	0.83[ASN][1000 genomes]
rs12117818	0.83[ASN][1000 genomes]
rs12129004	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12139139	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12145674	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1494368	0.83[ASN][1000 genomes]
rs1494372	0.80[ASN][1000 genomes]
rs17008806	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17596850	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17650107	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2242358	0.83[ASN][1000 genomes]
rs2279638	0.83[ASN][1000 genomes]
rs2378425	0.80[ASN][1000 genomes]
rs2642421	0.83[ASN][1000 genomes]
rs2807838	0.83[ASN][1000 genomes]
rs35730037	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4143773	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61830270	0.94[ASN][1000 genomes]
rs61830289	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6541161	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6668666	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6673877	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6693017	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7530074	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7530176	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7530493	0.86[ASN][1000 genomes]
rs7544735	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7553447	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs881995	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs903319	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs984676	0.83[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220961000-220976800	Weak transcription	Ovary	ovary
2	chr1:220961000-220978200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:220961000-220982200	Weak transcription	Brain Substantia Nigra	brain
4	chr1:220961400-220983800	Weak transcription	Esophagus	oesophagus
5	chr1:220961600-220983600	Weak transcription	Pancreas	Pancrea
6	chr1:220961800-220979800	Weak transcription	Right Atrium	heart
7	chr1:220961800-220981400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:220961800-220981600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr1:220961800-220983800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:220964800-220978400	Weak transcription	Primary B cells from cord blood	blood
11	chr1:220965000-220980000	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:220965200-220979600	Weak transcription	Gastric	stomach
13	chr1:220965200-220985400	Weak transcription	Aorta	Aorta
14	chr1:220965400-220982200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr1:220965600-220983600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:220965800-220983800	Weak transcription	Fetal Lung	lung
17	chr1:220966400-220996000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr1:220966600-220982400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr1:220966800-220985200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr1:220967600-220976400	Strong transcription	Adipose Nuclei	Adipose
21	chr1:220967600-220983800	Weak transcription	Psoas Muscle	Psoas
22	chr1:220968200-220977200	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr1:220969600-220975600	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr1:220969600-220978800	Strong transcription	HepG2	liver
25	chr1:220969800-220976400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:220969800-220976600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr1:220970000-220975600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:220970000-220975600	Strong transcription	Fetal Intestine Large	intestine
29	chr1:220970000-220976000	Strong transcription	Fetal Stomach	stomach
30	chr1:220970400-220981600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr1:220970400-220985800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr1:220970600-220976400	Strong transcription	Fetal Brain Female	brain
33	chr1:220970800-220981600	Weak transcription	Brain Hippocampus Middle	brain
34	chr1:220971000-220975600	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr1:220971000-220976400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:220971200-220976400	Strong transcription	Spleen	Spleen
37	chr1:220971200-220986400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr1:220971200-220991400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr1:220971600-220976200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr1:220971600-220980600	Strong transcription	Fetal Intestine Small	intestine
41	chr1:220971800-220975600	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr1:220972000-220976000	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr1:220972200-220975600	Weak transcription	Colon Smooth Muscle	Colon
44	chr1:220972200-220976800	Weak transcription	Hela-S3	cervix
45	chr1:220972200-220983800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr1:220972200-220984000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr1:220972800-220977800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr1:220972800-220987600	Weak transcription	Fetal Brain Male	brain
49	chr1:220973000-220975800	Strong transcription	Lung	lung
50	chr1:220973200-220979800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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