Variant report

Variant	rs12057411
Chromosome Location	chr1:221006035-221006036
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10495152	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10863567	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10863568	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11118609	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118611	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118615	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11118616	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118619	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11590678	0.83[ASN][1000 genomes]
rs12073837	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12089958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117818	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12124030	0.83[ASN][1000 genomes]
rs12129004	0.82[EUR][1000 genomes]
rs12139139	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145674	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1335919	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1494368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1494371	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1494372	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17008806	0.83[ASN][1000 genomes]
rs17596850	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17650107	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2279638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2378425	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35730037	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4143773	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61830270	0.88[ASN][1000 genomes]
rs61830289	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6541161	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6668666	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6673877	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6693017	0.87[ASN][1000 genomes]
rs7530074	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7530176	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7530493	0.97[ASN][1000 genomes]
rs7544735	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7553447	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs881995	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs903319	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs984676	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220984600-221006600	Weak transcription	Psoas Muscle	Psoas
2	chr1:221001800-221006400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:221002800-221006600	Weak transcription	Adipose Nuclei	Adipose
4	chr1:221002800-221006600	Weak transcription	Fetal Stomach	stomach
5	chr1:221002800-221016200	Weak transcription	Fetal Lung	lung
6	chr1:221003400-221006400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr1:221003600-221006200	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:221003600-221012200	Weak transcription	Fetal Heart	heart
9	chr1:221004200-221007800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:221004400-221014200	Weak transcription	Aorta	Aorta
11	chr1:221004800-221006400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr1:221004800-221006400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr1:221004800-221012800	Weak transcription	Left Ventricle	heart
14	chr1:221005400-221007600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:221006000-221007600	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links