Variant report

Variant	rs881995
Chromosome Location	chr1:220984494-220984495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220983495..220985579-chr10:50193516..50195970,2	K562	blood:

Variant related genes	Relation type
ENSG00000264800	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10495152	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10863567	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10863568	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11118609	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118611	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118615	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11118616	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11118619	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11590678	0.89[ASN][1000 genomes]
rs12057411	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12073837	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12089958	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12117818	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12124030	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12129004	0.94[CEU][hapmap];0.82[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12139139	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12145674	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1335919	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1494368	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1494371	0.81[EUR][1000 genomes]
rs1494372	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17008806	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17596850	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17650107	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2242358	0.89[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs2279638	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2378425	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2642421	0.89[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs2807838	0.82[ASN][1000 genomes]
rs35730037	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4143773	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61830270	0.94[ASN][1000 genomes]
rs61830289	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6541161	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6668666	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6673877	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6693017	0.94[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7530074	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7530176	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7530493	0.97[ASN][1000 genomes]
rs7544735	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7553447	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs903319	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs984676	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220965200-220985400	Weak transcription	Aorta	Aorta
2	chr1:220966400-220996000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr1:220966800-220985200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:220970400-220985800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr1:220971200-220986400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:220971200-220991400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:220972800-220987600	Weak transcription	Fetal Brain Male	brain
8	chr1:220973200-220991800	Weak transcription	Brain Anterior Caudate	brain
9	chr1:220973400-221000200	Weak transcription	Placenta	Placenta
10	chr1:220974000-220992800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr1:220974200-220986800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:220974200-220991200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:220975200-220992000	Weak transcription	Brain Germinal Matrix	brain
14	chr1:220975600-220988000	Weak transcription	Brain Angular Gyrus	brain
15	chr1:220975600-220991400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:220976400-220988000	Weak transcription	Spleen	Spleen
17	chr1:220978400-220991200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr1:220979400-220989400	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr1:220979800-220985200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr1:220980000-220985200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr1:220980400-221001400	Weak transcription	Gastric	stomach
22	chr1:220980600-220986600	Weak transcription	Fetal Brain Female	brain
23	chr1:220981000-220987600	Strong transcription	Hela-S3	cervix
24	chr1:220981400-220984800	Enhancers	Fetal Heart	heart
25	chr1:220981400-220991600	Strong transcription	Fetal Intestine Small	intestine
26	chr1:220982200-220984600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr1:220982200-220984600	Enhancers	Liver	Liver
28	chr1:220982400-220984600	Weak transcription	Brain Hippocampus Middle	brain
29	chr1:220982400-220987200	Weak transcription	Brain Substantia Nigra	brain
30	chr1:220982600-220985400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:220983200-220984600	Enhancers	Left Ventricle	heart
32	chr1:220983800-220984600	Enhancers	Psoas Muscle	Psoas
33	chr1:220983800-220984800	Genic enhancers	Right Ventricle	heart
34	chr1:220983800-220984800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr1:220983800-220985400	Enhancers	HUVEC	blood vessel
36	chr1:220984000-220984600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:220984000-220984600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr1:220984000-220984800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr1:220984000-220985000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:220984000-220985200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr1:220984000-220985200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr1:220984000-220985400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr1:220984000-220989400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr1:220984000-220991600	Weak transcription	Small Intestine	intestine
45	chr1:220984000-220992200	Weak transcription	Esophagus	oesophagus
46	chr1:220984000-220997400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr1:220984000-220999800	Weak transcription	Colonic Mucosa	Colon
48	chr1:220984200-220984800	Enhancers	Colon Smooth Muscle	Colon
49	chr1:220984200-220985000	Weak transcription	Fetal Intestine Large	intestine
50	chr1:220984200-220985000	Enhancers	Rectal Smooth Muscle	rectum

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