Variant report

Variant	rs11596234
Chromosome Location	chr10:4557508-4557509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3827049..3829866-chr10:4557123..4559023,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10450517	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10751975	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10751977	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10795175	0.96[ASN][1000 genomes]
rs10795178	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10795179	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10795180	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10795181	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10795182	0.96[ASN][1000 genomes]
rs10795183	0.96[ASN][1000 genomes]
rs10904267	0.96[ASN][1000 genomes]
rs10904268	0.96[ASN][1000 genomes]
rs10904270	0.82[ASN][1000 genomes]
rs11252572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252574	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573114	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573152	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17133097	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904663	0.96[ASN][1000 genomes]
rs1904664	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1904665	0.96[ASN][1000 genomes]
rs4242770	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278426	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4313471	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4414116	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4457647	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4511194	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4551658	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4881322	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4881323	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4881324	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4881325	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831298	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831305	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831306	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831307	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601847	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601848	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601849	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601850	0.86[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074882	0.89[EUR][1000 genomes]
rs7088567	0.96[ASN][1000 genomes]
rs7093366	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7099047	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7100737	0.85[EUR][1000 genomes]
rs7894388	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898372	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904235	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7910326	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910431	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917686	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9329310	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9663550	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998239	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1041785	chr10:4507158-4564194	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv522046	chr10:4538492-4570425	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv549862	chr10:4554018-4593307	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1040910	chr10:4554674-4606939	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4553200-4558400	Enhancers	NHDF-Ad	bronchial
2	chr10:4555000-4558400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:4555200-4558000	Enhancers	Spleen	Spleen
4	chr10:4555400-4561800	Weak transcription	Pancreas	Pancrea
5	chr10:4555600-4562000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:4555800-4558400	Enhancers	Right Atrium	heart
7	chr10:4556000-4557800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr10:4556000-4558000	Enhancers	Fetal Muscle Leg	muscle
9	chr10:4556000-4558400	Enhancers	Primary B cells from cord blood	blood
10	chr10:4556200-4557600	Weak transcription	Fetal Heart	heart
11	chr10:4556400-4558400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:4556600-4557800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:4556600-4568400	Weak transcription	HSMM	muscle
14	chr10:4556800-4557600	Enhancers	Placenta	Placenta
15	chr10:4556800-4558200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:4557000-4557800	Enhancers	Lung	lung
17	chr10:4557000-4558000	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr10:4557000-4558200	Enhancers	Right Ventricle	heart
19	chr10:4557000-4562000	Weak transcription	NHLF	lung
20	chr10:4557200-4557600	Enhancers	Adipose Nuclei	Adipose
21	chr10:4557200-4558200	Enhancers	GM12878-XiMat	blood
22	chr10:4557200-4558400	Enhancers	Left Ventricle	heart
23	chr10:4557200-4558600	Enhancers	Primary B cells from peripheral blood	blood
24	chr10:4557200-4561600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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