Variant report

Variant	rs7896083
Chromosome Location	chr10:4554018-4554019
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr10:4553566-4554357	SK-N-SH	brain:	n/a	n/a
2	TCF12	chr10:4553656-4554296	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4553609..4555147-chr10:4560263..4562993,2	K562	blood:

Variant related genes	Relation type
RNU6-163P	TF binding region

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10450517	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10751975	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10751977	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10795175	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10795178	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10795179	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10795180	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10795181	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10795182	0.96[ASN][1000 genomes]
rs10795183	0.96[ASN][1000 genomes]
rs10904267	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904268	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904270	0.82[ASN][1000 genomes]
rs11252572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252574	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11596234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573114	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573152	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17133097	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17133099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904663	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1904664	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1904665	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4242770	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4278426	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4313471	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4414116	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4457647	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4511194	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4551658	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4881322	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4881323	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4881324	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4881325	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831298	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831305	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831306	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61831307	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601847	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601848	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601849	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601850	0.86[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7074882	0.89[EUR][1000 genomes]
rs7088567	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7093366	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7099047	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7100737	0.85[EUR][1000 genomes]
rs7894388	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898372	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7904235	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7910326	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910431	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917686	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9329310	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9663550	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs998239	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1041785	chr10:4507158-4564194	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv522046	chr10:4538492-4570425	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv549862	chr10:4554018-4593307	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4541600-4554800	Weak transcription	NHLF	lung
2	chr10:4548600-4554600	Weak transcription	Fetal Heart	heart
3	chr10:4548600-4554800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:4548800-4555000	Weak transcription	Osteobl	bone
5	chr10:4552000-4556600	Weak transcription	Fetal Thymus	thymus
6	chr10:4552400-4555000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:4552800-4555200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:4553200-4555400	Enhancers	Fetal Lung	lung
9	chr10:4553200-4558400	Enhancers	NHDF-Ad	bronchial
10	chr10:4553600-4554200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:4553600-4555000	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:4553600-4555800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:4553800-4554200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:4553800-4554800	Weak transcription	NHEK	skin
15	chr10:4553800-4555000	Weak transcription	Fetal Stomach	stomach
16	chr10:4553800-4555200	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:4554000-4555000	Weak transcription	Fetal Kidney	kidney
18	chr10:4554000-4555400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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