Variant report

Variant	rs1904664
Chromosome Location	chr10:4532507-4532508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10450517	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751975	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10751977	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10795175	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10795178	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10795179	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10795180	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10795181	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10795182	1.00[ASN][1000 genomes]
rs10795183	1.00[ASN][1000 genomes]
rs10904267	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904268	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904270	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11252572	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252574	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11596234	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12573114	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12573152	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17133097	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17133099	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1904663	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904665	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4242770	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4278426	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4313471	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4414116	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4457647	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4511194	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4551658	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4881322	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4881323	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4881324	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4881325	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61831298	0.96[ASN][1000 genomes]
rs61831305	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61831306	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61831307	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6601847	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6601848	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6601849	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6601850	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7074882	0.84[EUR][1000 genomes]
rs7088567	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093366	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7099047	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7100737	0.80[EUR][1000 genomes]
rs7894388	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7896083	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7898372	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7904235	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910326	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7910431	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7917686	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9329310	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9663550	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs998239	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1041785	chr10:4507158-4564194	Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4529800-4532800	Enhancers	NHDF-Ad	bronchial

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