Variant report

Variant	rs11598726
Chromosome Location	chr10:50537013-50537014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50536963..50540512-chr10:50542123..50548139,6	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10776558	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10776560	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10857463	0.88[CEU][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10857464	0.88[CEU][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10857465	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10857471	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10857472	0.96[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11101084	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11101104	0.83[EUR][1000 genomes]
rs11101105	0.83[EUR][1000 genomes]
rs2377922	0.83[EUR][1000 genomes]
rs2377963	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2377964	0.88[CEU][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2377965	0.88[CEU][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2889802	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35326339	0.86[EUR][1000 genomes]
rs35654268	0.83[EUR][1000 genomes]
rs4540769	0.83[EUR][1000 genomes]
rs6537524	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7908002	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7917738	0.85[CEU][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7919800	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs870369	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50531800-50547800	Weak transcription	Pancreas	Pancrea
2	chr10:50533000-50540000	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:50534000-50537400	Weak transcription	Left Ventricle	heart
4	chr10:50534800-50541000	Weak transcription	Right Ventricle	heart
5	chr10:50535800-50541000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:50536600-50537800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr10:50536800-50537400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:50536800-50537600	Enhancers	Adipose Nuclei	Adipose
9	chr10:50536800-50538000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:50537000-50537200	Enhancers	Right Atrium	heart

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