Variant report

Variant	rs2377963
Chromosome Location	chr10:50519256-50519257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50518724..50520939-chr10:50521170..50522767,2	K562	blood:
2	chr10:50517433..50519865-chr10:50527374..50529904,2	K562	blood:
3	chr10:50507238..50509671-chr10:50517396..50520442,4	K562	blood:
4	chr10:50518664..50521454-chr10:50523153..50524705,2	K562	blood:
5	chr10:50516625..50523164-chr10:50524827..50529904,7	K562	blood:
6	chr10:50518535..50521351-chr10:50559747..50561511,2	K562	blood:

Variant related genes	Relation type
ENSG00000177354	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10776558	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10857463	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857464	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10857465	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10857471	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10857472	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11101084	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598726	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2377964	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377965	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2889802	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35326339	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6537524	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7908002	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7917738	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919800	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs870369	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50513800-50522000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
2	chr10:50517200-50530600	Weak transcription	Pancreas	Pancrea
3	chr10:50517400-50519400	Enhancers	Fetal Thymus	thymus
4	chr10:50517400-50519600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
5	chr10:50517400-50526400	Weak transcription	K562	blood
6	chr10:50517600-50520600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr10:50517800-50519400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:50517800-50519600	Enhancers	Spleen	Spleen
9	chr10:50518000-50519600	Weak transcription	Fetal Muscle Leg	muscle
10	chr10:50518000-50520800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr10:50518200-50519400	Enhancers	Primary T cells fromperipheralblood	blood
12	chr10:50518400-50520600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr10:50518400-50523200	Enhancers	Right Ventricle	heart
14	chr10:50518400-50523600	Enhancers	Left Ventricle	heart
15	chr10:50518600-50519800	Enhancers	Primary B cells from peripheral blood	blood
16	chr10:50518600-50520000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:50518600-50520200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:50518600-50520400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:50518600-50520800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr10:50518600-50522200	Enhancers	Fetal Heart	heart
21	chr10:50518800-50519400	Enhancers	Dnd41	blood
22	chr10:50518800-50520200	Enhancers	Primary B cells from cord blood	blood
23	chr10:50518800-50520600	Enhancers	Primary hematopoietic stem cells	blood
24	chr10:50518800-50520600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:50519200-50519400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:50519200-50519600	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr10:50519200-50519600	Enhancers	Psoas Muscle	Psoas
28	chr10:50519200-50519800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
29	chr10:50519200-50520000	Enhancers	Right Atrium	heart
30	chr10:50519200-50520400	Bivalent Enhancer	Placenta	Placenta
31	chr10:50519200-50520600	Enhancers	Adipose Nuclei	Adipose

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