Variant report

Variant	rs7908002
Chromosome Location	chr10:50529690-50529691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10776558	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10776560	0.86[AMR][1000 genomes]
rs10857463	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10857464	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10857465	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10857471	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10857472	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101084	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11598726	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2377963	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2377964	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2377965	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2889802	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35326339	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6537524	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917738	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7919800	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs870369	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50517200-50530600	Weak transcription	Pancreas	Pancrea
2	chr10:50527000-50530400	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:50527000-50530600	Weak transcription	Fetal Heart	heart
4	chr10:50527400-50530600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:50527400-50530600	Weak transcription	Right Ventricle	heart
6	chr10:50527400-50535800	Weak transcription	K562	blood
7	chr10:50528200-50534800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
8	chr10:50528600-50530800	Weak transcription	Right Atrium	heart
9	chr10:50528800-50530600	Weak transcription	Left Ventricle	heart
10	chr10:50528800-50533200	Weak transcription	Psoas Muscle	Psoas
11	chr10:50529000-50532400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:50529000-50532600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:50529000-50532800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:50529600-50533400	Genic enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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