Variant report

Variant	rs11600128
Chromosome Location	chr11:34812140-34812141
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34807272..34809273-chr11:34809643..34812382,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1039841	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10501136	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10836315	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11600239	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11601422	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11602870	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11602886	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11603640	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11603751	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11605381	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12272777	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12278295	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12291580	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12293044	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12791769	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12793173	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12794294	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12803664	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12808574	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1594425	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1594426	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1897203	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1949048	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34026463	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34136526	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34191151	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34282125	0.90[ASN][1000 genomes]
rs34284115	0.82[ASN][1000 genomes]
rs34878924	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34999475	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35264793	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35357012	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35617374	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35712504	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35833762	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35953213	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61881094	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881097	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61881103	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61881104	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61881107	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7106579	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7131074	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs836466	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv897214	chr11:34764251-34821948	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1049551	chr11:34811180-34833640	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34805800-34812800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:34806000-34814000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:34806400-34812200	Weak transcription	Stomach Mucosa	stomach
4	chr11:34806600-34812800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:34809800-34813400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:34810400-34813800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:34810800-34813200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:34811400-34816000	Weak transcription	Esophagus	oesophagus
9	chr11:34811800-34812400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:34811800-34813200	Weak transcription	Colonic Mucosa	Colon
11	chr11:34811800-34813800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:34811800-34814000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:34811800-34814200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:34811800-34818800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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