Variant report

Variant	rs11601422
Chromosome Location	chr11:34793759-34793760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1039841	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10501136	0.93[AFR][1000 genomes]
rs11600128	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11600239	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11601205	0.84[ASN][1000 genomes]
rs11601923	0.84[ASN][1000 genomes]
rs11602318	0.84[ASN][1000 genomes]
rs11602870	0.93[AFR][1000 genomes]
rs11602886	0.93[AFR][1000 genomes]
rs11602909	0.84[ASN][1000 genomes]
rs11603640	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11603751	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11604069	0.84[ASN][1000 genomes]
rs11605381	0.93[AFR][1000 genomes]
rs11605785	0.80[ASN][1000 genomes]
rs12791769	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12792532	0.82[ASN][1000 genomes]
rs12793173	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12794294	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12801509	0.80[ASN][1000 genomes]
rs12803664	0.93[AFR][1000 genomes]
rs1355222	0.82[ASN][1000 genomes]
rs1355223	0.84[ASN][1000 genomes]
rs1361645	0.80[ASN][1000 genomes]
rs1396879	0.84[ASN][1000 genomes]
rs1396883	0.82[ASN][1000 genomes]
rs1539250	0.80[ASN][1000 genomes]
rs1539251	0.80[ASN][1000 genomes]
rs1594425	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1594426	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1773908	0.80[ASN][1000 genomes]
rs1773910	0.80[ASN][1000 genomes]
rs1897203	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1949048	0.86[AFR][1000 genomes]
rs2221720	0.82[ASN][1000 genomes]
rs34026463	0.93[AFR][1000 genomes]
rs34136526	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34282125	0.96[ASN][1000 genomes]
rs34284115	0.87[ASN][1000 genomes]
rs34729653	0.82[ASN][1000 genomes]
rs34878924	0.93[AFR][1000 genomes]
rs34999475	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35264793	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35357012	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35617374	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35712504	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35833762	0.93[AFR][1000 genomes]
rs5010670	0.84[ASN][1000 genomes]
rs60130036	0.82[ASN][1000 genomes]
rs61881094	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61881097	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61881104	0.93[AFR][1000 genomes]
rs7102625	0.80[ASN][1000 genomes]
rs7106579	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7131074	0.93[AFR][1000 genomes]
rs836462	0.80[ASN][1000 genomes]
rs836466	0.82[ASN][1000 genomes]
rs860712	0.80[ASN][1000 genomes]
rs865070	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1052008	chr11:34641598-34794024	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897214	chr11:34764251-34821948	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34787600-34805600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34792200-34811000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:34793400-34796200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:34793600-34793800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:34793600-34793800	Enhancers	Lung	lung
6	chr11:34793600-34794200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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