Variant report

Variant	rs34729653
Chromosome Location	chr11:76195309-76195310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10501134	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11032804	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11032806	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11600402	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11601205	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11601422	0.82[ASN][1000 genomes]
rs11601923	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11602318	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11602669	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11602909	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11602944	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11603718	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11603774	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11604069	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11604882	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11605785	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11607035	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11607300	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11819839	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11821793	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12417662	0.82[ASN][1000 genomes]
rs1258464	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1258466	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1258468	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1258469	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1258470	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12792532	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12800220	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12801509	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12802120	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12802323	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12802798	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12803316	0.86[ASN][1000 genomes]
rs12809046	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1355221	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1355222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1355223	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1361645	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1377495	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1396879	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1396883	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453380	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1453387	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1539250	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1539251	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1578622	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1588353	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1597962	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1703996	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17293467	0.86[ASN][1000 genomes]
rs17359064	0.82[ASN][1000 genomes]
rs1773908	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1773910	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1869360	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1901831	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2185700	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2221720	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226113	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2281908	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs286858	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286861	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286862	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286864	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs286885	0.92[ASN][1000 genomes]
rs286893	0.85[ASN][1000 genomes]
rs34284115	0.86[ASN][1000 genomes]
rs34610590	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34751755	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34875830	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35032224	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35357012	0.82[ASN][1000 genomes]
rs3818514	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4465347	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs448016	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5010670	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60130036	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881050	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6484726	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs680727	0.93[ASN][1000 genomes]
rs704744	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7101790	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7102625	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7112608	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7116409	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7121272	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7129089	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7130325	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7131090	0.82[ASN][1000 genomes]
rs7925421	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7943363	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7943755	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7944030	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs836462	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs836466	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs836467	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs860712	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs865070	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs896856	0.86[ASN][1000 genomes]
rs913204	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3383733	chr11:76186353-76225544	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
2	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
3	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:76177400-76195400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:76180200-76204200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:76184400-76235000	Weak transcription	NHEK	skin
7	chr11:76184800-76202600	Weak transcription	Aorta	Aorta
8	chr11:76185000-76204000	Weak transcription	Right Ventricle	heart
9	chr11:76189000-76231400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:76189200-76211600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:76189400-76223000	Weak transcription	HUVEC	blood vessel
12	chr11:76190600-76207200	Weak transcription	Brain Substantia Nigra	brain
13	chr11:76190800-76234200	Weak transcription	Left Ventricle	heart
14	chr11:76191000-76203800	Weak transcription	Colonic Mucosa	Colon
15	chr11:76191200-76202600	Weak transcription	HepG2	liver
16	chr11:76191400-76202600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:76191400-76203200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:76191400-76203600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:76191400-76204000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:76191400-76204600	Weak transcription	HSMMtube	muscle
21	chr11:76191400-76204800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:76191400-76204800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr11:76191400-76205600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr11:76191400-76206600	Weak transcription	Fetal Brain Male	brain
25	chr11:76191400-76207000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:76191400-76211200	Weak transcription	NH-A	brain
27	chr11:76191400-76211400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr11:76191400-76211400	Weak transcription	Fetal Kidney	kidney
29	chr11:76191400-76211400	Weak transcription	HMEC	breast
30	chr11:76191400-76211600	Weak transcription	Fetal Heart	heart
31	chr11:76191400-76221200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr11:76191400-76239000	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:76191600-76199400	Weak transcription	Primary T cells from cord blood	blood
34	chr11:76191600-76201400	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr11:76191600-76201600	Weak transcription	Stomach Mucosa	stomach
36	chr11:76191600-76201800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr11:76191600-76202400	Weak transcription	Brain Angular Gyrus	brain
38	chr11:76191600-76202400	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:76191600-76202600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr11:76191600-76202800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:76191600-76202800	Weak transcription	K562	blood
42	chr11:76191600-76204000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:76191600-76204200	Weak transcription	NHLF	lung
44	chr11:76191600-76204400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:76191600-76204600	Weak transcription	A549	lung
46	chr11:76191600-76205000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr11:76191600-76207000	Weak transcription	HSMM	muscle
48	chr11:76191600-76207200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:76191600-76207200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:76191600-76231600	Weak transcription	NHDF-Ad	bronchial

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