Variant report

Variant	rs286885
Chromosome Location	chr11:34687346-34687347
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34685399..34688268-chr11:34690502..34692704,2	MCF-7	breast:
2	chr11:34686232..34690169-chr11:34690691..34694222,3	K562	blood:
3	chr11:34676055..34678665-chr11:34685926..34687942,2	MCF-7	breast:

Extended variants
information (count: 113 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10501134	0.81[EUR][1000 genomes]
rs10501136	0.92[CHD][hapmap];0.94[JPT][hapmap]
rs11032804	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032806	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600402	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601205	0.89[ASN][1000 genomes]
rs11601923	0.89[ASN][1000 genomes]
rs11602318	0.89[ASN][1000 genomes]
rs11602669	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11602909	0.89[ASN][1000 genomes]
rs11602944	0.87[ASN][1000 genomes]
rs11603718	0.87[ASN][1000 genomes]
rs11603774	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11604069	0.89[ASN][1000 genomes]
rs11605785	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11607035	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11607300	0.90[ASN][1000 genomes]
rs11819839	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11821793	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278295	0.93[JPT][hapmap]
rs12291580	0.93[JPT][hapmap]
rs12417662	0.85[ASN][1000 genomes]
rs1258464	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1258466	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1258468	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1258469	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1258470	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12788231	0.81[ASN][1000 genomes]
rs12792532	0.87[ASN][1000 genomes]
rs12800220	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12801509	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12802120	0.81[EUR][1000 genomes]
rs12802323	0.81[EUR][1000 genomes]
rs12802798	0.81[EUR][1000 genomes]
rs12803316	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12809046	0.88[ASN][1000 genomes]
rs1355222	0.92[ASN][1000 genomes]
rs1355223	0.89[ASN][1000 genomes]
rs1361645	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1377495	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1396879	0.89[ASN][1000 genomes]
rs1396883	0.92[ASN][1000 genomes]
rs1453380	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1453387	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1539250	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1539251	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1578622	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1588353	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1597962	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1703996	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17293467	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17359064	0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1773908	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1773910	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1869360	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1901831	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2185700	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2221720	0.92[ASN][1000 genomes]
rs2226113	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2281908	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286858	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286861	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286862	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs286864	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs286889	0.92[ASW][hapmap]
rs286893	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34610590	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34729653	0.92[ASN][1000 genomes]
rs34751755	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34875830	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35032224	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3818514	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4465347	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs448016	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5010670	0.89[ASN][1000 genomes]
rs60130036	0.92[ASN][1000 genomes]
rs61881050	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6484726	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs680727	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs704744	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7101790	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7102625	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7112608	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7116409	0.81[EUR][1000 genomes]
rs7121272	0.81[EUR][1000 genomes]
rs7129089	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7130325	0.81[EUR][1000 genomes]
rs7131090	0.85[ASN][1000 genomes]
rs7925421	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943363	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943755	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7944030	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs836462	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs836466	0.92[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs836467	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs860712	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs865070	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs896856	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs913204	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1045130	chr11:34641598-34777725	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1052192	chr11:34641598-34781288	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1051492	chr11:34641598-34789331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1052008	chr11:34641598-34794024	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv467788	chr11:34642493-34770494	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv553998	chr11:34642493-34770494	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv518807	chr11:34642493-34780936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv519718	chr11:34642493-34780936	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv467789	chr11:34642493-34780936	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv467790	chr11:34642493-34780936	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv553999	chr11:34642493-34780936	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv554000	chr11:34643780-34780936	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs286885	APIP	cis	cerebellum	SCAN
rs286885	APIP	cis	Skin Sun Exposed Lower leg	GTEx
rs286885	PDHX	cis	cerebellum	SCAN
rs286885	APIP	cis	multi-tissue	Pritchard
rs286885	APIP	cis	Esophagus Muscularis	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34674800-34689200	Weak transcription	Gastric	stomach
2	chr11:34676600-34689200	Weak transcription	Esophagus	oesophagus
3	chr11:34677000-34688800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:34678200-34689600	Weak transcription	Stomach Mucosa	stomach
5	chr11:34681600-34689200	Weak transcription	Pancreas	Pancrea
6	chr11:34683800-34689600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:34686400-34689600	Enhancers	HepG2	liver
8	chr11:34686600-34687400	Enhancers	K562	blood
9	chr11:34686600-34687800	Enhancers	Liver	Liver
10	chr11:34686800-34687600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:34686800-34687600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:34686800-34690000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:34687000-34687400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:34687000-34687400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:34687000-34687400	Flanking Active TSS	NHEK	skin
16	chr11:34687200-34687600	Enhancers	A549	lung

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