Variant report

Variant	rs896856
Chromosome Location	chr11:34676842-34676843
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34673816..34675543-chr11:34675726..34677757,2	K562	blood:
2	chr11:34653892..34655575-chr11:34674253..34677029,2	MCF-7	breast:
3	chr11:34659576..34666077-chr11:34671950..34677960,8	MCF-7	breast:
4	chr11:34675778..34678396-chr11:34681432..34685655,3	K562	blood:
5	chr11:34676055..34678665-chr11:34685926..34687942,2	MCF-7	breast:
6	chr11:34675426..34678725-chr11:34681137..34686486,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135373	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10501136	0.94[JPT][hapmap]
rs11032804	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11032806	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11600402	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11601205	0.83[ASN][1000 genomes]
rs11601923	0.83[ASN][1000 genomes]
rs11602318	0.83[ASN][1000 genomes]
rs11602669	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11602909	0.83[ASN][1000 genomes]
rs11602944	0.80[ASN][1000 genomes]
rs11603718	0.80[ASN][1000 genomes]
rs11603774	0.89[ASN][1000 genomes]
rs11604069	0.83[ASN][1000 genomes]
rs11605785	0.87[ASN][1000 genomes]
rs11607035	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11607300	0.83[ASN][1000 genomes]
rs11819839	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11821793	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12278295	0.94[JPT][hapmap]
rs12291580	0.93[JPT][hapmap]
rs1258464	0.89[ASN][1000 genomes]
rs1258466	0.89[ASN][1000 genomes]
rs1258468	0.89[ASN][1000 genomes]
rs1258469	0.89[ASN][1000 genomes]
rs1258470	0.89[ASN][1000 genomes]
rs12792532	0.81[ASN][1000 genomes]
rs12800220	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12801509	0.87[ASN][1000 genomes]
rs12803316	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12809046	0.82[ASN][1000 genomes]
rs1355222	0.86[ASN][1000 genomes]
rs1355223	0.83[ASN][1000 genomes]
rs1361645	0.87[ASN][1000 genomes]
rs1377495	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1396879	0.83[ASN][1000 genomes]
rs1396883	0.86[ASN][1000 genomes]
rs1453380	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1453387	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1539250	0.87[ASN][1000 genomes]
rs1539251	0.87[ASN][1000 genomes]
rs1578622	0.89[ASN][1000 genomes]
rs1588353	0.87[ASN][1000 genomes]
rs1597962	0.89[ASN][1000 genomes]
rs1703996	0.89[ASN][1000 genomes]
rs17293467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1773908	0.87[ASN][1000 genomes]
rs1773910	0.87[ASN][1000 genomes]
rs1869360	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1901831	0.89[ASN][1000 genomes]
rs2185700	0.89[ASN][1000 genomes]
rs2221720	0.86[ASN][1000 genomes]
rs2226113	0.86[ASN][1000 genomes]
rs2281908	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs286858	0.89[ASN][1000 genomes]
rs286861	0.89[ASN][1000 genomes]
rs286862	0.89[ASN][1000 genomes]
rs286864	0.84[ASN][1000 genomes]
rs286885	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs286893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34610590	0.89[ASN][1000 genomes]
rs34729653	0.86[ASN][1000 genomes]
rs34751755	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34875830	0.89[ASN][1000 genomes]
rs35032224	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3818514	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4465347	0.89[ASN][1000 genomes]
rs448016	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5010670	0.83[ASN][1000 genomes]
rs60130036	0.86[ASN][1000 genomes]
rs61881050	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6484726	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs680727	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs704744	0.89[ASN][1000 genomes]
rs7101790	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7102625	0.87[ASN][1000 genomes]
rs7112608	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7129089	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7925421	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7943363	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7943755	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7944030	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs836462	0.87[ASN][1000 genomes]
rs836466	1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs836467	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs860712	0.87[ASN][1000 genomes]
rs865070	0.87[ASN][1000 genomes]
rs913204	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1045130	chr11:34641598-34777725	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1052192	chr11:34641598-34781288	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1051492	chr11:34641598-34789331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1052008	chr11:34641598-34794024	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv467788	chr11:34642493-34770494	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv553998	chr11:34642493-34770494	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv518807	chr11:34642493-34780936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv519718	chr11:34642493-34780936	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv467789	chr11:34642493-34780936	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv467790	chr11:34642493-34780936	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv553999	chr11:34642493-34780936	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv554000	chr11:34643780-34780936	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34664400-34677000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:34664600-34681800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:34667400-34681800	Weak transcription	Fetal Kidney	kidney
4	chr11:34669600-34678200	Enhancers	Stomach Mucosa	stomach
5	chr11:34671600-34681600	Weak transcription	Fetal Stomach	stomach
6	chr11:34672000-34677200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:34672200-34678600	Weak transcription	Right Atrium	heart
8	chr11:34672800-34678400	Enhancers	Brain Substantia Nigra	brain
9	chr11:34673000-34677600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:34673200-34677800	Enhancers	NHDF-Ad	bronchial
11	chr11:34673200-34677800	Enhancers	Osteobl	bone
12	chr11:34673200-34678800	Enhancers	Brain Hippocampus Middle	brain
13	chr11:34673400-34677200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:34673400-34677400	Enhancers	Brain Anterior Caudate	brain
15	chr11:34673600-34677000	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr11:34674000-34677000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:34674200-34677000	Enhancers	NHLF	lung
18	chr11:34674400-34677000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:34674400-34677000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr11:34674400-34677200	Flanking Active TSS	Hela-S3	cervix
21	chr11:34674400-34677400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr11:34674400-34678600	Enhancers	Brain Cingulate Gyrus	brain
23	chr11:34674400-34678800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:34674600-34677000	Enhancers	Placenta	Placenta
25	chr11:34674600-34678200	Enhancers	Brain Angular Gyrus	brain
26	chr11:34674800-34677000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:34674800-34677200	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr11:34674800-34677400	Enhancers	Liver	Liver
29	chr11:34674800-34677600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr11:34674800-34677800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:34674800-34689200	Weak transcription	Gastric	stomach
32	chr11:34675000-34677000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:34675200-34677400	Flanking Active TSS	HepG2	liver
34	chr11:34675400-34677000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:34675400-34677000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:34675400-34677200	Enhancers	Adipose Nuclei	Adipose
37	chr11:34675400-34677600	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr11:34675400-34677800	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr11:34675600-34677000	Enhancers	H1 Cell Line	embryonic stem cell
40	chr11:34675600-34677000	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr11:34675600-34677000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:34675600-34678000	Enhancers	HMEC	breast
43	chr11:34675800-34677000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:34675800-34677000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:34675800-34677000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
46	chr11:34675800-34677200	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr11:34675800-34677800	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr11:34676000-34677400	Flanking Active TSS	A549	lung
49	chr11:34676000-34677800	Genic enhancers	NHEK	skin
50	chr11:34676000-34685200	Strong transcription	Rectal Mucosa Donor 31	rectum

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