Variant report

Variant	rs17359064
Chromosome Location	chr11:34673884-34673885
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34673845..34676364-chr11:34936249..34938409,2	MCF-7	breast:
2	chr11:34658574..34661382-chr11:34673276..34674986,2	K562	blood:
3	chr11:34673816..34675543-chr11:34675726..34677757,2	K562	blood:
4	chr11:34661556..34663728-chr11:34672732..34675363,2	K562	blood:
5	chr11:34669421..34671173-chr11:34672153..34673980,2	MCF-7	breast:
6	chr11:34659576..34666077-chr11:34671950..34677960,8	MCF-7	breast:
7	chr11:34673700..34675383-chr11:34678871..34681043,2	K562	blood:
8	chr11:34667026..34669860-chr11:34670729..34674074,4	MCF-7	breast:
9	chr11:34671534..34674106-chr11:34677263..34680105,2	K562	blood:
10	chr11:34660689..34662189-chr11:34672411..34674964,2	MCF-7	breast:
11	chr11:34624693..34626791-chr11:34672431..34674013,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000149089	Chromatin interaction
ENSG00000135373	Chromatin interaction
ENSG00000110435	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10501136	0.94[JPT][hapmap]
rs11032804	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11032806	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11600402	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11602669	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11603774	0.86[ASN][1000 genomes]
rs11605785	0.83[ASN][1000 genomes]
rs11607035	0.86[ASN][1000 genomes]
rs11607300	0.80[ASN][1000 genomes]
rs11819839	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11821793	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12278295	0.94[JPT][hapmap]
rs12291580	0.93[JPT][hapmap]
rs1258464	0.86[ASN][1000 genomes]
rs1258466	0.86[ASN][1000 genomes]
rs1258468	0.86[ASN][1000 genomes]
rs1258469	0.86[ASN][1000 genomes]
rs1258470	0.86[ASN][1000 genomes]
rs12800220	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12801509	0.83[ASN][1000 genomes]
rs12803316	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1355222	0.82[ASN][1000 genomes]
rs1361645	0.83[ASN][1000 genomes]
rs1377495	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1396883	0.82[ASN][1000 genomes]
rs1453380	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1453387	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1539250	0.83[ASN][1000 genomes]
rs1539251	0.83[ASN][1000 genomes]
rs1578622	0.86[ASN][1000 genomes]
rs1588353	0.83[ASN][1000 genomes]
rs1597962	0.86[ASN][1000 genomes]
rs1703996	0.86[ASN][1000 genomes]
rs17293467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1773908	0.83[ASN][1000 genomes]
rs1773910	0.83[ASN][1000 genomes]
rs1869360	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1901831	0.86[ASN][1000 genomes]
rs2185700	0.86[ASN][1000 genomes]
rs2221720	0.82[ASN][1000 genomes]
rs2226113	0.82[ASN][1000 genomes]
rs2281908	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs286858	0.86[ASN][1000 genomes]
rs286861	0.86[ASN][1000 genomes]
rs286862	0.86[ASN][1000 genomes]
rs286864	0.80[ASN][1000 genomes]
rs286885	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs286893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34610590	0.86[ASN][1000 genomes]
rs34729653	0.82[ASN][1000 genomes]
rs34751755	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34875830	0.86[ASN][1000 genomes]
rs35032224	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3818514	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4465347	0.86[ASN][1000 genomes]
rs448016	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60130036	0.82[ASN][1000 genomes]
rs61881050	0.86[ASN][1000 genomes]
rs6484726	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs680727	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs704744	0.86[ASN][1000 genomes]
rs7101790	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7102625	0.83[ASN][1000 genomes]
rs7112608	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7129089	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7925421	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7943363	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7943755	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7944030	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs836462	0.83[ASN][1000 genomes]
rs836466	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs860712	0.83[ASN][1000 genomes]
rs865070	0.83[ASN][1000 genomes]
rs896856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs913204	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832116	chr11:34539536-34673900	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1045130	chr11:34641598-34777725	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1052192	chr11:34641598-34781288	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1051492	chr11:34641598-34789331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1052008	chr11:34641598-34794024	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv467788	chr11:34642493-34770494	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv553998	chr11:34642493-34770494	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv518807	chr11:34642493-34780936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv519718	chr11:34642493-34780936	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv467789	chr11:34642493-34780936	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv467790	chr11:34642493-34780936	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv553999	chr11:34642493-34780936	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv554000	chr11:34643780-34780936	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34656200-34674400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:34664400-34677000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:34664600-34681800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:34667400-34681800	Weak transcription	Fetal Kidney	kidney
5	chr11:34667600-34674000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:34668200-34675400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:34668400-34674000	Strong transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:34669400-34674000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:34669400-34674400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:34669400-34676000	Genic enhancers	Rectal Mucosa Donor 31	rectum
11	chr11:34669600-34674800	Weak transcription	HSMM	muscle
12	chr11:34669600-34675000	Weak transcription	HSMMtube	muscle
13	chr11:34669600-34678200	Enhancers	Stomach Mucosa	stomach
14	chr11:34670400-34674200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr11:34670400-34674800	Genic enhancers	Gastric	stomach
16	chr11:34671000-34674000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr11:34671200-34674200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:34671200-34674200	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr11:34671200-34674600	Genic enhancers	NHEK	skin
20	chr11:34671200-34676400	Enhancers	Primary B cells from peripheral blood	blood
21	chr11:34671400-34674400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:34671400-34674400	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr11:34671400-34674800	Enhancers	Small Intestine	intestine
24	chr11:34671600-34674200	Strong transcription	Fetal Intestine Large	intestine
25	chr11:34671600-34675800	Enhancers	K562	blood
26	chr11:34671600-34676800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:34671600-34681600	Weak transcription	Fetal Stomach	stomach
28	chr11:34671800-34674600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:34671800-34676600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:34672000-34676800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:34672000-34677200	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr11:34672200-34674200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:34672200-34674200	Weak transcription	NHLF	lung
34	chr11:34672200-34678600	Weak transcription	Right Atrium	heart
35	chr11:34672400-34674000	Weak transcription	Adipose Nuclei	Adipose
36	chr11:34672400-34674400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:34672600-34674000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:34672600-34674000	Weak transcription	Fetal Intestine Small	intestine
39	chr11:34672600-34674200	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr11:34672600-34674400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:34672600-34675000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:34672600-34676400	Genic enhancers	Rectal Mucosa Donor 29	rectum
43	chr11:34672800-34674000	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr11:34672800-34678400	Enhancers	Brain Substantia Nigra	brain
45	chr11:34673000-34674000	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr11:34673000-34674400	Enhancers	Hela-S3	cervix
47	chr11:34673000-34674800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:34673000-34675800	Weak transcription	Esophagus	oesophagus
49	chr11:34673000-34677600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:34673200-34674800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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