Variant report

Variant	rs12803316
Chromosome Location	chr11:34677511-34677512
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34673816..34675543-chr11:34675726..34677757,2	K562	blood:
2	chr11:34659576..34666077-chr11:34671950..34677960,8	MCF-7	breast:
3	chr11:34675778..34678396-chr11:34681432..34685655,3	K562	blood:
4	chr11:34676055..34678665-chr11:34685926..34687942,2	MCF-7	breast:
5	chr11:34671534..34674106-chr11:34677263..34680105,2	K562	blood:
6	chr11:34675426..34678725-chr11:34681137..34686486,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135373	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs11032804	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11032806	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11600402	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11601205	0.83[ASN][1000 genomes]
rs11601923	0.83[ASN][1000 genomes]
rs11602318	0.83[ASN][1000 genomes]
rs11602669	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11602909	0.83[ASN][1000 genomes]
rs11602944	0.80[ASN][1000 genomes]
rs11603718	0.80[ASN][1000 genomes]
rs11603774	0.89[ASN][1000 genomes]
rs11604069	0.83[ASN][1000 genomes]
rs11605785	0.87[ASN][1000 genomes]
rs11607035	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11607300	0.83[ASN][1000 genomes]
rs11819839	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11821793	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1258464	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1258466	0.89[ASN][1000 genomes]
rs1258468	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1258469	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1258470	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12792532	0.81[ASN][1000 genomes]
rs12800220	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12801509	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12809046	0.82[ASN][1000 genomes]
rs1355222	0.86[ASN][1000 genomes]
rs1355223	0.83[ASN][1000 genomes]
rs1361645	0.87[ASN][1000 genomes]
rs1377495	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1396879	0.83[ASN][1000 genomes]
rs1396883	0.86[ASN][1000 genomes]
rs1453380	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1453387	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1539250	0.87[ASN][1000 genomes]
rs1539251	0.87[ASN][1000 genomes]
rs1578622	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1588353	0.87[ASN][1000 genomes]
rs1597962	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1703996	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17293467	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17359064	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1773908	0.87[ASN][1000 genomes]
rs1773910	0.87[ASN][1000 genomes]
rs1869360	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1901831	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2185700	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2221720	0.86[ASN][1000 genomes]
rs2226113	0.86[ASN][1000 genomes]
rs2281908	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs286858	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs286861	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs286862	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs286864	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs286885	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs286893	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34610590	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34729653	0.86[ASN][1000 genomes]
rs34751755	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34875830	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35032224	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3818514	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4465347	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs448016	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5010670	0.83[ASN][1000 genomes]
rs60130036	0.86[ASN][1000 genomes]
rs61881050	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6484726	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs680727	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs704744	0.89[ASN][1000 genomes]
rs7101790	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7102625	0.87[ASN][1000 genomes]
rs7112608	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7129089	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7925421	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7943363	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7943755	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7944030	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs836462	0.87[ASN][1000 genomes]
rs836466	0.82[ASN][1000 genomes]
rs836467	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs860712	0.87[ASN][1000 genomes]
rs865070	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs896856	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs913204	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1045130	chr11:34641598-34777725	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1052192	chr11:34641598-34781288	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1051492	chr11:34641598-34789331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1052008	chr11:34641598-34794024	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv467788	chr11:34642493-34770494	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv553998	chr11:34642493-34770494	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv518807	chr11:34642493-34780936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv519718	chr11:34642493-34780936	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv467789	chr11:34642493-34780936	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv467790	chr11:34642493-34780936	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv553999	chr11:34642493-34780936	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv554000	chr11:34643780-34780936	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12803316	APIP	cis	Esophagus Muscularis	GTEx

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34664600-34681800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:34667400-34681800	Weak transcription	Fetal Kidney	kidney
3	chr11:34669600-34678200	Enhancers	Stomach Mucosa	stomach
4	chr11:34671600-34681600	Weak transcription	Fetal Stomach	stomach
5	chr11:34672200-34678600	Weak transcription	Right Atrium	heart
6	chr11:34672800-34678400	Enhancers	Brain Substantia Nigra	brain
7	chr11:34673000-34677600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:34673200-34677800	Enhancers	NHDF-Ad	bronchial
9	chr11:34673200-34677800	Enhancers	Osteobl	bone
10	chr11:34673200-34678800	Enhancers	Brain Hippocampus Middle	brain
11	chr11:34674400-34678600	Enhancers	Brain Cingulate Gyrus	brain
12	chr11:34674400-34678800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:34674600-34678200	Enhancers	Brain Angular Gyrus	brain
14	chr11:34674800-34677600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:34674800-34677800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:34674800-34689200	Weak transcription	Gastric	stomach
17	chr11:34675400-34677600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr11:34675400-34677800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr11:34675600-34678000	Enhancers	HMEC	breast
20	chr11:34675800-34677800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr11:34676000-34677800	Genic enhancers	NHEK	skin
22	chr11:34676000-34685200	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr11:34676400-34685400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr11:34676600-34677600	Enhancers	Small Intestine	intestine
25	chr11:34676600-34678000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:34676600-34678000	Weak transcription	Pancreas	Pancrea
27	chr11:34676600-34682000	Strong transcription	Fetal Intestine Large	intestine
28	chr11:34676600-34689200	Weak transcription	Esophagus	oesophagus
29	chr11:34676800-34678000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:34676800-34678400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:34676800-34678600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:34676800-34679400	Strong transcription	Fetal Intestine Small	intestine
33	chr11:34676800-34679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:34676800-34683400	Strong transcription	Duodenum Mucosa	Duodenum
35	chr11:34677000-34677600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:34677000-34677600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:34677000-34678000	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:34677000-34678400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:34677000-34680400	Weak transcription	Colonic Mucosa	Colon
40	chr11:34677000-34683400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:34677000-34684000	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:34677000-34688800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr11:34677200-34677600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:34677200-34678400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:34677200-34678800	Enhancers	Hela-S3	cervix
46	chr11:34677400-34678400	Weak transcription	Liver	Liver
47	chr11:34677400-34678800	Enhancers	A549	lung
48	chr11:34677400-34681600	Enhancers	HepG2	liver

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