Variant report

Variant	rs34284115
Chromosome Location	chr11:34761025-34761026
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11600128	0.82[ASN][1000 genomes]
rs11600239	0.81[ASN][1000 genomes]
rs11601205	0.83[ASN][1000 genomes]
rs11601422	0.87[ASN][1000 genomes]
rs11601923	0.83[ASN][1000 genomes]
rs11602318	0.83[ASN][1000 genomes]
rs11602909	0.83[ASN][1000 genomes]
rs11603751	0.81[ASN][1000 genomes]
rs11603774	0.81[ASN][1000 genomes]
rs11604069	0.83[ASN][1000 genomes]
rs11605785	0.84[ASN][1000 genomes]
rs11606257	0.82[AMR][1000 genomes]
rs11607035	0.81[ASN][1000 genomes]
rs11607300	0.83[ASN][1000 genomes]
rs11819839	0.81[ASN][1000 genomes]
rs1258464	0.81[ASN][1000 genomes]
rs1258466	0.81[ASN][1000 genomes]
rs1258468	0.81[ASN][1000 genomes]
rs1258469	0.81[ASN][1000 genomes]
rs1258470	0.81[ASN][1000 genomes]
rs12788231	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12792532	0.81[ASN][1000 genomes]
rs12801509	0.84[ASN][1000 genomes]
rs1355222	0.86[ASN][1000 genomes]
rs1355223	0.83[ASN][1000 genomes]
rs1361645	0.84[ASN][1000 genomes]
rs1396879	0.83[ASN][1000 genomes]
rs1396883	0.86[ASN][1000 genomes]
rs1539250	0.84[ASN][1000 genomes]
rs1539251	0.84[ASN][1000 genomes]
rs1578622	0.81[ASN][1000 genomes]
rs1597962	0.81[ASN][1000 genomes]
rs1703996	0.81[ASN][1000 genomes]
rs1773908	0.84[ASN][1000 genomes]
rs1773910	0.84[ASN][1000 genomes]
rs1897203	0.81[ASN][1000 genomes]
rs1901831	0.81[ASN][1000 genomes]
rs2185700	0.81[ASN][1000 genomes]
rs2221720	0.86[ASN][1000 genomes]
rs2226113	0.83[ASN][1000 genomes]
rs286858	0.81[ASN][1000 genomes]
rs286861	0.81[ASN][1000 genomes]
rs286862	0.81[ASN][1000 genomes]
rs34136526	0.81[ASN][1000 genomes]
rs34199375	0.82[AMR][1000 genomes]
rs34282125	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34610590	0.81[ASN][1000 genomes]
rs34729653	0.86[ASN][1000 genomes]
rs34875830	0.81[ASN][1000 genomes]
rs35357012	0.87[ASN][1000 genomes]
rs35712504	0.81[ASN][1000 genomes]
rs4465347	0.81[ASN][1000 genomes]
rs5010670	0.83[ASN][1000 genomes]
rs60130036	0.86[ASN][1000 genomes]
rs61881050	0.81[ASN][1000 genomes]
rs61881094	0.82[ASN][1000 genomes]
rs61881097	0.81[ASN][1000 genomes]
rs704744	0.81[ASN][1000 genomes]
rs7102625	0.84[ASN][1000 genomes]
rs836462	0.84[ASN][1000 genomes]
rs836466	0.86[ASN][1000 genomes]
rs860712	0.84[ASN][1000 genomes]
rs865070	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1045130	chr11:34641598-34777725	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1052192	chr11:34641598-34781288	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1051492	chr11:34641598-34789331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1052008	chr11:34641598-34794024	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv467788	chr11:34642493-34770494	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv553998	chr11:34642493-34770494	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv518807	chr11:34642493-34780936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv519718	chr11:34642493-34780936	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv467789	chr11:34642493-34780936	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv467790	chr11:34642493-34780936	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv553999	chr11:34642493-34780936	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv554000	chr11:34643780-34780936	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34735000-34761600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:34752800-34770800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:34759800-34780000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:34760200-34774400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:34760200-34776200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:34760200-34776800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:34760400-34787000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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