Variant report

Variant	rs34282125
Chromosome Location	chr11:34801630-34801631
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1039841	0.82[ASN][1000 genomes]
rs11600128	0.90[ASN][1000 genomes]
rs11600239	0.89[ASN][1000 genomes]
rs11601205	0.80[ASN][1000 genomes]
rs11601422	0.96[ASN][1000 genomes]
rs11601846	0.87[AMR][1000 genomes]
rs11601923	0.80[ASN][1000 genomes]
rs11602318	0.80[ASN][1000 genomes]
rs11602909	0.80[ASN][1000 genomes]
rs11603640	0.82[ASN][1000 genomes]
rs11603751	0.89[ASN][1000 genomes]
rs11604069	0.80[ASN][1000 genomes]
rs12788231	0.81[ASN][1000 genomes]
rs12791769	0.82[ASN][1000 genomes]
rs12793173	0.82[ASN][1000 genomes]
rs12794294	0.83[ASN][1000 genomes]
rs1355223	0.80[ASN][1000 genomes]
rs1396879	0.80[ASN][1000 genomes]
rs1594425	0.82[ASN][1000 genomes]
rs1594426	0.82[ASN][1000 genomes]
rs1897203	0.89[ASN][1000 genomes]
rs34136526	0.89[ASN][1000 genomes]
rs34284115	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34999475	0.82[ASN][1000 genomes]
rs35264793	0.82[ASN][1000 genomes]
rs35357012	0.96[ASN][1000 genomes]
rs35617374	0.82[ASN][1000 genomes]
rs35712504	0.89[ASN][1000 genomes]
rs5010670	0.80[ASN][1000 genomes]
rs61881094	0.90[ASN][1000 genomes]
rs61881097	0.89[ASN][1000 genomes]
rs7106579	0.82[ASN][1000 genomes]
rs731726	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv897214	chr11:34764251-34821948	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv3355226	chr11:34800976-34805174	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34787600-34805600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34792200-34811000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:34801200-34804600	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links