Variant report

Variant	rs11600797
Chromosome Location	chr11:9782771-9782772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9683816..9686109-chr11:9781623..9784319,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133789	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11601212	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11607169	1.00[ASN][1000 genomes]
rs12419046	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12419471	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61876881	0.82[EUR][1000 genomes]
rs61876891	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61876892	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1045550	chr11:9718324-9790088	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9780200-9786600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:9780600-9813200	Weak transcription	Small Intestine	intestine
3	chr11:9780800-9783600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr11:9780800-9786600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:9780800-9788600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:9780800-9788600	Enhancers	Fetal Heart	heart
7	chr11:9780800-9794200	Enhancers	Fetal Muscle Leg	muscle
8	chr11:9781000-9782800	Enhancers	HSMMtube	muscle
9	chr11:9781000-9783800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:9781000-9783800	Enhancers	NH-A	brain
11	chr11:9781000-9784400	Enhancers	NHLF	lung
12	chr11:9781000-9786800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:9781200-9783600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:9781200-9789400	Enhancers	Placenta	Placenta
15	chr11:9781400-9783200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:9781400-9783800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:9781400-9786600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:9781400-9795200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr11:9781400-9800800	Weak transcription	Fetal Brain Female	brain
20	chr11:9781600-9783600	Weak transcription	Gastric	stomach
21	chr11:9781600-9783800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:9781600-9785800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:9781600-9786400	Weak transcription	Fetal Kidney	kidney
24	chr11:9781600-9786600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:9781600-9786800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:9781600-9798200	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr11:9781600-9801000	Weak transcription	Primary T cells from cord blood	blood
28	chr11:9781600-9809000	Weak transcription	Fetal Brain Male	brain
29	chr11:9781800-9782800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr11:9781800-9782800	Enhancers	Osteobl	bone
31	chr11:9781800-9783000	Enhancers	HSMM	muscle
32	chr11:9781800-9783200	Weak transcription	Brain Substantia Nigra	brain
33	chr11:9781800-9783200	Weak transcription	K562	blood
34	chr11:9781800-9783600	Weak transcription	Spleen	Spleen
35	chr11:9781800-9786000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:9781800-9786600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr11:9781800-9786600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr11:9781800-9790800	Enhancers	NHDF-Ad	bronchial
39	chr11:9781800-9799200	Weak transcription	Primary B cells from cord blood	blood
40	chr11:9781800-9799200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:9781800-9801200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr11:9781800-9801600	Weak transcription	Primary B cells from peripheral blood	blood
43	chr11:9782000-9785400	Weak transcription	Psoas Muscle	Psoas
44	chr11:9782000-9798000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:9782200-9783600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:9782200-9783600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:9782200-9783600	Weak transcription	Esophagus	oesophagus
48	chr11:9782200-9783600	Weak transcription	Right Ventricle	heart
49	chr11:9782200-9783600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:9782200-9784000	Enhancers	NHEK	skin

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