Variant report

Variant	rs1160159
Chromosome Location	chr10:45177480-45177481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10508886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1383372	1.00[EUR][1000 genomes]
rs1480601	1.00[AMR][1000 genomes]
rs1480602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17156768	1.00[EUR][1000 genomes]
rs17156780	1.00[EUR][1000 genomes]
rs17410869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17411297	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17411416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17488295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17488845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17502634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60916454	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv525947	chr10:45163568-45182316	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45172800-45177800	Weak transcription	Brain Germinal Matrix	brain
2	chr10:45175200-45177600	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:45176200-45178200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:45176200-45185800	Weak transcription	Aorta	Aorta
5	chr10:45176400-45178000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:45177200-45178200	Enhancers	Fetal Lung	lung
7	chr10:45177400-45178800	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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