Variant report

Variant	rs17488295
Chromosome Location	chr10:45145776-45145777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10508886	1.00[AMR][1000 genomes]
rs1160159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1480601	1.00[AMR][1000 genomes]
rs1480602	1.00[AMR][1000 genomes]
rs17410869	1.00[AMR][1000 genomes]
rs17411297	1.00[AMR][1000 genomes]
rs17411416	1.00[AMR][1000 genomes]
rs17488845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17502634	1.00[AMR][1000 genomes]
rs60916454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45143000-45147400	Enhancers	Brain Germinal Matrix	brain
2	chr10:45143000-45147600	Enhancers	Ovary	ovary
3	chr10:45143000-45148000	Enhancers	Fetal Muscle Trunk	muscle
4	chr10:45143400-45146400	Weak transcription	Fetal Brain Female	brain
5	chr10:45144000-45146000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:45144000-45146200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:45144000-45146400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr10:45144200-45146400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:45144200-45146600	Weak transcription	Pancreas	Pancrea
10	chr10:45144400-45146200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:45144400-45146200	Weak transcription	Fetal Kidney	kidney
12	chr10:45145000-45146000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:45145000-45146600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:45145200-45146800	Enhancers	Fetal Brain Male	brain
15	chr10:45145200-45147400	Enhancers	Fetal Stomach	stomach
16	chr10:45145200-45147600	Enhancers	Fetal Muscle Leg	muscle
17	chr10:45145400-45147600	Enhancers	Fetal Lung	lung
18	chr10:45145600-45145800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr10:45145600-45146000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr10:45145600-45146600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:45145600-45146600	Enhancers	NHDF-Ad	bronchial

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