Variant report

Variant	rs60916454
Chromosome Location	chr10:45155272-45155273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10508886	1.00[AMR][1000 genomes]
rs1160159	1.00[AMR][1000 genomes]
rs1480601	1.00[AMR][1000 genomes]
rs1480602	1.00[AMR][1000 genomes]
rs17156768	0.86[AFR][1000 genomes]
rs17410869	1.00[AMR][1000 genomes]
rs17411297	1.00[AMR][1000 genomes]
rs17411416	1.00[AMR][1000 genomes]
rs17488295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17488845	1.00[AMR][1000 genomes]
rs17502634	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45148000-45155600	Weak transcription	Osteobl	bone
2	chr10:45154800-45156000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:45154800-45156400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:45154800-45156400	Enhancers	NHDF-Ad	bronchial
5	chr10:45154800-45158000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:45155000-45156800	Enhancers	HSMMtube	muscle
7	chr10:45155000-45159600	Enhancers	Fetal Muscle Leg	muscle
8	chr10:45155200-45155400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:45155200-45156000	Weak transcription	Fetal Stomach	stomach
10	chr10:45155200-45156400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:45155200-45156600	Enhancers	NHLF	lung
12	chr10:45155200-45157400	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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