Variant report

Variant	rs17488845
Chromosome Location	chr10:45170177-45170178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10508886	1.00[AMR][1000 genomes]
rs1160159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1480601	1.00[AMR][1000 genomes]
rs1480602	1.00[AMR][1000 genomes]
rs17410869	1.00[AMR][1000 genomes]
rs17411297	1.00[AMR][1000 genomes]
rs17411416	1.00[AMR][1000 genomes]
rs17488295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17502634	1.00[AMR][1000 genomes]
rs60916454	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv525947	chr10:45163568-45182316	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45156400-45175800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:45168800-45170600	Enhancers	Colon Smooth Muscle	Colon
3	chr10:45168800-45171400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr10:45169000-45170400	Enhancers	Rectal Smooth Muscle	rectum
5	chr10:45169000-45170600	Enhancers	Fetal Stomach	stomach
6	chr10:45169000-45171400	Enhancers	Fetal Muscle Leg	muscle
7	chr10:45169400-45170400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:45169600-45170400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:45169800-45170600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:45169800-45170600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:45169800-45170600	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr10:45169800-45171400	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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