Variant report

Variant	rs11601732
Chromosome Location	chr11:121247527-121247528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10790445	0.85[CHB][hapmap]
rs10892748	1.00[ASN][1000 genomes]
rs11218278	0.98[ASN][1000 genomes]
rs11601739	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277757	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12294794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12295061	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12295762	0.87[ASN][1000 genomes]
rs17125207	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2043107	0.85[ASN][1000 genomes]
rs2370386	1.00[ASN][1000 genomes]
rs297501	0.96[ASN][1000 genomes]
rs297505	0.93[ASN][1000 genomes]
rs34801051	0.98[ASN][1000 genomes]
rs34874617	0.85[ASN][1000 genomes]
rs35015954	0.85[ASN][1000 genomes]
rs4936624	0.85[CHB][hapmap]
rs4936625	0.85[CHB][hapmap]
rs684490	0.89[ASN][1000 genomes]
rs7101565	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112762	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115574	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7115832	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126163	0.82[AFR][1000 genomes]
rs7126261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73594788	1.00[ASN][1000 genomes]
rs73596707	0.96[ASN][1000 genomes]
rs7937444	0.92[ASN][1000 genomes]
rs9651698	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121230800-121249800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:121239600-121259200	Weak transcription	Psoas Muscle	Psoas
3	chr11:121242600-121251200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:121243000-121247600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:121243000-121247600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr11:121243000-121251000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr11:121243200-121247600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr11:121244200-121248400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:121244200-121248400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:121244200-121249800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr11:121244200-121251200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr11:121244400-121248400	Weak transcription	Dnd41	blood
13	chr11:121244800-121260200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:121245000-121249600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:121245000-121249600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:121245600-121251000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:121245800-121248800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:121246200-121249000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr11:121246200-121249600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:121246200-121250200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:121246400-121248600	Enhancers	Primary T cells fromperipheralblood	blood
22	chr11:121246400-121248800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:121246400-121249600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:121246400-121249600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:121246400-121250800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr11:121246600-121249600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:121246800-121247600	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr11:121246800-121247800	Enhancers	Primary T cells from cord blood	blood
29	chr11:121246800-121251200	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr11:121247000-121251200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:121247000-121251200	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr11:121247200-121249600	Weak transcription	Fetal Thymus	thymus
33	chr11:121247400-121247800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:121247400-121248400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links