Variant report

Variant	rs12295762
Chromosome Location	chr11:121233914-121233915
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:121233712-121233975	A549	lung:	n/a	n/a
2	POLR2A	chr11:121233806-121233986	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr11:121233694-121233992	Hela-S3	cervix:	n/a	n/a
4	TAF1	chr11:121233702-121233994	HepG2	liver:	n/a	n/a
5	HEY1	chr11:121233745-121233997	K562	blood:	n/a	n/a
6	HEY1	chr11:121233826-121233980	HepG2	liver:	n/a	n/a
7	POLR2A	chr11:121233691-121234000	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr11:121233725-121233967	A549	lung:	n/a	n/a
9	POLR2A	chr11:121233498-121234083	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr11:121233599-121233979	A549	lung:	n/a	n/a
11	POLR2A	chr11:121233571-121233974	Gliobla	brain:	n/a	n/a
12	POLR2A	chr11:121233876-121233993	HepG2	liver:	n/a	n/a
13	POLR2A	chr11:121233750-121233988	H1-hESC	embryonic stem cell:	n/a	n/a
14	HEY1	chr11:121233686-121234006	K562	blood:	n/a	n/a
15	POLR2A	chr11:121233703-121233984	GM12878	blood:	n/a	n/a
16	MYC	chr11:121233714-121233966	MCF-7	breast:	n/a	n/a
17	TAF1	chr11:121233747-121234062	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr11:121233869-121233941	HepG2	liver:	n/a	n/a
19	POLR2A	chr11:121233675-121233976	ProgFib	skin:	n/a	n/a
20	POLR2A	chr11:121233745-121234097	PANC-1	pancreas:	n/a	n/a
21	POLR2A	chr11:121233639-121234034	GM12892	blood:	n/a	n/a
22	POLR2A	chr11:121233595-121233977	MCF-7	breast:	n/a	n/a
23	POLR2A	chr11:121233686-121233997	A549	lung:	n/a	n/a
24	POLR2A	chr11:121233671-121233974	K562	blood:	n/a	n/a
25	TAF1	chr11:121233679-121234005	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr11:121233710-121234014	A549	lung:	n/a	n/a
27	HEY1	chr11:121233797-121234026	HepG2	liver:	n/a	n/a
28	POLR2A	chr11:121233669-121234091	Hela-S3	cervix:	n/a	n/a
29	POLR2A	chr11:121233664-121233954	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr11:121233608-121233977	MCF-7	breast:	n/a	n/a
31	TAF1	chr11:121233632-121234007	HepG2	liver:	n/a	n/a
32	POLR2A	chr11:121233678-121233972	H1-hESC	embryonic stem cell:	n/a	n/a
33	SIN3AK20	chr11:121233834-121233977	HepG2	liver:	n/a	n/a
34	POLR2A	chr11:121233701-121233982	GM12878	blood:	n/a	n/a
35	CTCF	chr11:121233857-121233920	H1-hESC	embryonic stem cell:	n/a	n/a
36	POLR2A	chr11:121233606-121233977	MCF-7	breast:	n/a	n/a

No data

Variant related genes	Relation type
BMPR1APS2	TF binding region

rs_ID	r²[population]
rs10892748	0.87[ASN][1000 genomes]
rs11218278	0.85[ASN][1000 genomes]
rs11601732	0.87[ASN][1000 genomes]
rs11601739	0.87[ASN][1000 genomes]
rs12277757	0.88[ASN][1000 genomes]
rs12294794	0.88[ASN][1000 genomes]
rs12295061	0.85[ASN][1000 genomes]
rs12805207	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17125182	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17125207	0.88[ASN][1000 genomes]
rs17245928	0.88[EUR][1000 genomes]
rs17245949	0.88[EUR][1000 genomes]
rs2043107	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2370386	0.87[ASN][1000 genomes]
rs297487	0.83[EUR][1000 genomes]
rs297500	0.83[EUR][1000 genomes]
rs297501	0.84[ASN][1000 genomes]
rs297505	0.81[ASN][1000 genomes]
rs34801051	0.85[ASN][1000 genomes]
rs34874617	0.98[ASN][1000 genomes]
rs35003739	0.88[EUR][1000 genomes]
rs35015954	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35463460	0.88[EUR][1000 genomes]
rs7101565	0.87[ASN][1000 genomes]
rs7112762	0.87[ASN][1000 genomes]
rs7115574	0.84[ASN][1000 genomes]
rs7115832	0.87[ASN][1000 genomes]
rs7126261	0.87[ASN][1000 genomes]
rs71486378	0.88[EUR][1000 genomes]
rs733435	0.88[EUR][1000 genomes]
rs73594788	0.87[ASN][1000 genomes]
rs73596707	0.84[ASN][1000 genomes]
rs747220	0.88[EUR][1000 genomes]
rs7937444	0.82[ASN][1000 genomes]
rs9651698	0.87[ASN][1000 genomes]

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121224200-121236000	Weak transcription	Fetal Brain Female	brain
2	chr11:121230800-121234200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:121230800-121249800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:121231000-121235800	Weak transcription	Fetal Brain Male	brain
5	chr11:121231000-121238000	Weak transcription	Right Atrium	heart
6	chr11:121233600-121234000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:121233600-121234000	Active TSS	HSMMtube	muscle

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