Variant report

Variant	rs11605937
Chromosome Location	chr11:65318123-65318124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65317456..65320108-chr11:65409381..65411829,2	K562	blood:
2	chr11:65317657..65319340-chr11:65625571..65627845,2	K562	blood:
3	chr11:65264365..65266366-chr11:65317003..65319991,2	K562	blood:
4	chr11:65317777..65320540-chr11:65382585..65385188,2	K562	blood:
5	chr11:65264483..65267723-chr11:65317387..65320009,5	MCF-7	breast:
6	chr11:65318049..65318986-chr11:65337261..65337964,2	MCF-7	breast:
7	chr11:65316910..65318706-chr11:65381900..65384785,2	MCF-7	breast:
8	chr11:65264479..65268560-chr11:65318003..65330456,22	MCF-7	breast:
9	chr11:65190162..65194738-chr11:65316952..65321274,6	K562	blood:
10	chr11:65184371..65196984-chr11:65316952..65328208,29	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197136	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000173327	Chromatin interaction
ENSG00000213445	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000173465	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000260233	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000172732	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11545200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11600543	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11602375	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11604369	0.84[EUR][1000 genomes]
rs11605810	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1194337	0.82[EUR][1000 genomes]
rs12799784	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34789990	0.80[EUR][1000 genomes]
rs35111506	0.88[EUR][1000 genomes]
rs35138901	0.84[EUR][1000 genomes]
rs3782089	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71462347	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7935877	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897715	chr11:65083491-65427346	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
2	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases
3	esv1829999	chr11:65136686-65343124	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	963 gene(s)	inside rSNPs	diseases
4	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
5	nsv541068	chr11:65142779-65331136	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	953 gene(s)	inside rSNPs	diseases
6	nsv541069	chr11:65142779-65368787	Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	965 gene(s)	inside rSNPs	diseases
7	nsv541070	chr11:65142779-65397058	Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	972 gene(s)	inside rSNPs	diseases
8	nsv541071	chr11:65142779-65429352	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
9	nsv897719	chr11:65157094-65335705	Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	949 gene(s)	inside rSNPs	diseases
10	nsv541073	chr11:65171202-65331136	Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	949 gene(s)	inside rSNPs	diseases
11	nsv541074	chr11:65171202-65368787	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	961 gene(s)	inside rSNPs	diseases
12	nsv541075	chr11:65210592-65331136	Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	620 gene(s)	inside rSNPs	diseases
13	nsv541076	chr11:65210592-65397058	Flanking Active TSS Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	645 gene(s)	inside rSNPs	diseases
14	nsv897720	chr11:65213434-65445950	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	665 gene(s)	inside rSNPs	diseases
15	nsv897721	chr11:65278461-65422853	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
16	nsv897722	chr11:65278461-65436888	Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
17	nsv897723	chr11:65294830-65481166	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
18	nsv897726	chr11:65300252-65318871	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases
19	nsv897728	chr11:65302893-65318871	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases
20	nsv897729	chr11:65302893-65322548	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	30 gene(s)	inside rSNPs	diseases
21	nsv897730	chr11:65302893-65376484	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
22	nsv897731	chr11:65304592-65318871	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65307200-65322600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:65308400-65319000	Weak transcription	Small Intestine	intestine
3	chr11:65309000-65318400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:65309200-65318400	Weak transcription	HUVEC	blood vessel
5	chr11:65309200-65320600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:65309200-65320600	Strong transcription	Osteobl	bone
7	chr11:65309200-65322200	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:65309200-65323000	Weak transcription	Psoas Muscle	Psoas
9	chr11:65309400-65319000	Weak transcription	NHDF-Ad	bronchial
10	chr11:65309400-65319400	Weak transcription	HSMM	muscle
11	chr11:65309400-65323000	Weak transcription	Right Atrium	heart
12	chr11:65309800-65322200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:65310200-65320400	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr11:65310200-65320800	Strong transcription	Brain Cingulate Gyrus	brain
15	chr11:65310400-65322000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:65310800-65324000	Weak transcription	Fetal Kidney	kidney
17	chr11:65313000-65320800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:65313600-65318600	Weak transcription	Brain Substantia Nigra	brain
19	chr11:65314200-65318600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:65314400-65318800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:65314600-65318200	Weak transcription	Liver	Liver
22	chr11:65314600-65318200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:65314600-65318400	Weak transcription	Colonic Mucosa	Colon
24	chr11:65314600-65318400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:65314600-65318400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:65314600-65318400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:65314600-65318600	Strong transcription	Fetal Muscle Leg	muscle
28	chr11:65314600-65318800	Weak transcription	Stomach Mucosa	stomach
29	chr11:65314600-65319000	Strong transcription	Stomach Smooth Muscle	stomach
30	chr11:65314600-65321000	Strong transcription	Fetal Stomach	stomach
31	chr11:65314800-65319000	Strong transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:65314800-65320600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:65314800-65321600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr11:65314800-65322800	Weak transcription	NHEK	skin
35	chr11:65315000-65318200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr11:65315000-65318400	Strong transcription	Fetal Intestine Small	intestine
37	chr11:65315000-65319000	Weak transcription	HMEC	breast
38	chr11:65315000-65319200	Strong transcription	Adipose Nuclei	Adipose
39	chr11:65315000-65319800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr11:65315000-65320200	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr11:65315200-65318400	Weak transcription	Fetal Heart	heart
42	chr11:65315200-65318800	Strong transcription	Fetal Lung	lung
43	chr11:65315200-65320200	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr11:65315200-65320400	Strong transcription	Colon Smooth Muscle	Colon
45	chr11:65315200-65321200	Weak transcription	Fetal Brain Male	brain
46	chr11:65315400-65318600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:65315400-65321200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:65315600-65318400	Weak transcription	Esophagus	oesophagus
49	chr11:65315600-65318400	Strong transcription	Fetal Muscle Trunk	muscle
50	chr11:65315600-65319600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood

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