Variant report

Variant	rs35111506
Chromosome Location	chr11:65334712-65334713
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:65334420-65334968	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65182317..65198249-chr11:65333937..65346467,45	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LTBP3-1	chr11:65333533-65337942	NONHSAT022168

Variant related genes	Relation type
SSSCA1	TF binding region
ENSG00000245532	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11545200	0.88[EUR][1000 genomes]
rs11605810	0.84[EUR][1000 genomes]
rs11605937	0.88[EUR][1000 genomes]
rs12799784	0.81[EUR][1000 genomes]
rs2239895	1.00[AFR][1000 genomes]
rs2307264	1.00[AFR][1000 genomes]
rs34412377	1.00[AFR][1000 genomes]
rs34789990	1.00[AFR][1000 genomes]
rs35361085	0.80[AMR][1000 genomes]
rs36009527	1.00[AFR][1000 genomes]
rs36085849	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3741384	1.00[AFR][1000 genomes]
rs3782089	0.88[EUR][1000 genomes]
rs71462347	0.84[EUR][1000 genomes]
rs7935877	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897715	chr11:65083491-65427346	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
2	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases
3	esv1829999	chr11:65136686-65343124	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	963 gene(s)	inside rSNPs	diseases
4	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
5	nsv541069	chr11:65142779-65368787	Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	965 gene(s)	inside rSNPs	diseases
6	nsv541070	chr11:65142779-65397058	Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	972 gene(s)	inside rSNPs	diseases
7	nsv541071	chr11:65142779-65429352	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
8	nsv897719	chr11:65157094-65335705	Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	949 gene(s)	inside rSNPs	diseases
9	nsv541074	chr11:65171202-65368787	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	961 gene(s)	inside rSNPs	diseases
10	nsv541076	chr11:65210592-65397058	Flanking Active TSS Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	645 gene(s)	inside rSNPs	diseases
11	nsv897720	chr11:65213434-65445950	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	665 gene(s)	inside rSNPs	diseases
12	nsv897721	chr11:65278461-65422853	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
13	nsv897722	chr11:65278461-65436888	Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
14	nsv897723	chr11:65294830-65481166	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
15	nsv897730	chr11:65302893-65376484	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65326800-65336800	Weak transcription	Aorta	Aorta
2	chr11:65328600-65336400	Weak transcription	Fetal Brain Female	brain
3	chr11:65328600-65336400	Weak transcription	Gastric	stomach
4	chr11:65328800-65335600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:65328800-65335800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:65328800-65336000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr11:65328800-65336200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:65328800-65336200	Weak transcription	Fetal Brain Male	brain
9	chr11:65328800-65336200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:65328800-65336200	Weak transcription	Right Atrium	heart
11	chr11:65328800-65336400	Weak transcription	Left Ventricle	heart
12	chr11:65329000-65335400	Weak transcription	Liver	Liver
13	chr11:65329000-65336000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:65329000-65336200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:65329000-65336200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:65329000-65336200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:65329000-65336400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:65329000-65336400	Weak transcription	Fetal Kidney	kidney
19	chr11:65329000-65336400	Weak transcription	HSMMtube	muscle
20	chr11:65329000-65336800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:65329400-65335200	Weak transcription	Brain Germinal Matrix	brain
22	chr11:65329400-65336200	Weak transcription	Psoas Muscle	Psoas
23	chr11:65329400-65336600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:65329600-65335600	Weak transcription	Fetal Lung	lung
25	chr11:65329600-65336200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:65329600-65336400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:65330800-65335200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:65331000-65334800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr11:65331400-65335600	Weak transcription	HepG2	liver
30	chr11:65331400-65336200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:65331800-65336600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:65332400-65336200	Enhancers	Primary B cells from cord blood	blood
33	chr11:65332400-65336200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:65332400-65336400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:65332600-65335400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:65333200-65335800	Weak transcription	Stomach Mucosa	stomach
37	chr11:65333200-65336200	Strong transcription	Fetal Stomach	stomach
38	chr11:65333400-65335600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr11:65333400-65336600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr11:65333600-65334800	Strong transcription	Brain Cingulate Gyrus	brain
41	chr11:65333600-65335200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:65333600-65335600	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:65333600-65335800	Weak transcription	K562	blood
44	chr11:65333600-65336200	Weak transcription	NHDF-Ad	bronchial
45	chr11:65333600-65336200	Weak transcription	NHLF	lung
46	chr11:65333600-65336400	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr11:65333800-65335200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr11:65333800-65335200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr11:65333800-65335400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr11:65333800-65335400	Weak transcription	A549	lung

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