Variant report

Variant	rs36085849
Chromosome Location	chr11:65295181-65295182
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65185186..65203592-chr11:65286522..65299399,55	K562	blood:

Variant related genes	Relation type
ENSG00000245532	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11600543	0.87[EUR][1000 genomes]
rs11602375	0.87[EUR][1000 genomes]
rs11604369	0.83[EUR][1000 genomes]
rs11605810	0.84[EUR][1000 genomes]
rs1194337	0.81[EUR][1000 genomes]
rs12799784	0.81[EUR][1000 genomes]
rs2239895	1.00[AFR][1000 genomes]
rs2307264	1.00[AFR][1000 genomes]
rs34412377	1.00[AFR][1000 genomes]
rs34789990	1.00[AFR][1000 genomes]
rs35111506	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35138901	0.83[EUR][1000 genomes]
rs35361085	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36009527	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3741384	1.00[AFR][1000 genomes]
rs71462347	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897715	chr11:65083491-65427346	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
2	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases
3	esv1829999	chr11:65136686-65343124	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	963 gene(s)	inside rSNPs	diseases
4	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
5	nsv541067	chr11:65142779-65313799	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	950 gene(s)	inside rSNPs	diseases
6	nsv541068	chr11:65142779-65331136	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	953 gene(s)	inside rSNPs	diseases
7	nsv541069	chr11:65142779-65368787	Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	965 gene(s)	inside rSNPs	diseases
8	nsv541070	chr11:65142779-65397058	Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	972 gene(s)	inside rSNPs	diseases
9	nsv541071	chr11:65142779-65429352	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
10	nsv897719	chr11:65157094-65335705	Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	949 gene(s)	inside rSNPs	diseases
11	nsv541072	chr11:65171202-65313799	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	946 gene(s)	inside rSNPs	diseases
12	nsv541073	chr11:65171202-65331136	Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	949 gene(s)	inside rSNPs	diseases
13	nsv541074	chr11:65171202-65368787	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	961 gene(s)	inside rSNPs	diseases
14	nsv541075	chr11:65210592-65331136	Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	620 gene(s)	inside rSNPs	diseases
15	nsv541076	chr11:65210592-65397058	Flanking Active TSS Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	645 gene(s)	inside rSNPs	diseases
16	nsv897720	chr11:65213434-65445950	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	665 gene(s)	inside rSNPs	diseases
17	nsv897721	chr11:65278461-65422853	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
18	nsv897722	chr11:65278461-65436888	Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
19	nsv897723	chr11:65294830-65481166	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65293400-65296400	Weak transcription	Aorta	Aorta
2	chr11:65293600-65297400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:65293600-65297600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:65293600-65297600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:65293600-65297800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:65293600-65299000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:65293600-65300200	Weak transcription	Psoas Muscle	Psoas
8	chr11:65293600-65305600	Weak transcription	Right Atrium	heart
9	chr11:65293600-65307600	Weak transcription	Small Intestine	intestine
10	chr11:65293800-65295400	Strong transcription	Fetal Kidney	kidney
11	chr11:65293800-65295600	Genic enhancers	Liver	Liver
12	chr11:65293800-65296000	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:65293800-65296200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:65293800-65297600	Weak transcription	A549	lung
15	chr11:65293800-65298000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:65293800-65302800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:65294000-65295800	Weak transcription	Primary B cells from cord blood	blood
18	chr11:65294000-65296200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:65294000-65296400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:65294000-65296800	Strong transcription	Thymus	Thymus
21	chr11:65294000-65297000	Weak transcription	Left Ventricle	heart
22	chr11:65294000-65297200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:65294000-65297200	Weak transcription	Brain Angular Gyrus	brain
24	chr11:65294000-65298200	Weak transcription	Stomach Mucosa	stomach
25	chr11:65294000-65300200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr11:65294000-65300600	Strong transcription	HSMM	muscle
27	chr11:65294000-65300800	Strong transcription	Colonic Mucosa	Colon
28	chr11:65294000-65301400	Strong transcription	Esophagus	oesophagus
29	chr11:65294000-65305800	Strong transcription	Fetal Brain Female	brain
30	chr11:65294000-65305800	Strong transcription	Fetal Intestine Large	intestine
31	chr11:65294000-65306400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:65294000-65306400	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr11:65294000-65306400	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:65294000-65306600	Weak transcription	Fetal Heart	heart
35	chr11:65294000-65306800	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:65294000-65307000	Strong transcription	Lung	lung
37	chr11:65294000-65307200	Strong transcription	Brain Cingulate Gyrus	brain
38	chr11:65294200-65295200	Strong transcription	Brain Anterior Caudate	brain
39	chr11:65294200-65295600	Strong transcription	Fetal Lung	lung
40	chr11:65294200-65295800	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr11:65294200-65296000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr11:65294200-65296400	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:65294200-65296400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr11:65294200-65296800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:65294200-65297200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr11:65294200-65300400	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr11:65294200-65300400	Strong transcription	GM12878-XiMat	blood
48	chr11:65294200-65301000	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr11:65294200-65301200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:65294200-65301200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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