Variant report

Variant	rs34789990
Chromosome Location	chr11:65252477-65252478
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65178877..65218546-chr11:65218612..65286191,1014	K562	blood:
2	chr11:65251502..65254034-chr11:65343367..65344998,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173442	Chromatin interaction
ENSG00000245532	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11545200	0.80[EUR][1000 genomes]
rs11600543	0.92[EUR][1000 genomes]
rs11602375	0.92[EUR][1000 genomes]
rs11604369	0.96[EUR][1000 genomes]
rs11605810	0.88[EUR][1000 genomes]
rs11605937	0.80[EUR][1000 genomes]
rs1194337	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12286951	0.80[AMR][1000 genomes]
rs12799784	0.81[EUR][1000 genomes]
rs2239895	1.00[AFR][1000 genomes]
rs2307264	1.00[AFR][1000 genomes]
rs34412377	1.00[AFR][1000 genomes]
rs35111506	1.00[AFR][1000 genomes]
rs35138901	0.96[EUR][1000 genomes]
rs36009527	1.00[AFR][1000 genomes]
rs36085849	1.00[AFR][1000 genomes]
rs3741384	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3782089	0.80[EUR][1000 genomes]
rs71462347	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	esv2422285	chr11:65013294-65254540	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases
3	nsv897715	chr11:65083491-65427346	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
4	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases
5	nsv541065	chr11:65117387-65271894	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	835 gene(s)	inside rSNPs	diseases
6	esv1829999	chr11:65136686-65343124	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	963 gene(s)	inside rSNPs	diseases
7	nsv897717	chr11:65140209-65278461	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	942 gene(s)	inside rSNPs	diseases
8	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
9	nsv541066	chr11:65142779-65271894	Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	833 gene(s)	inside rSNPs	diseases
10	nsv541067	chr11:65142779-65313799	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	950 gene(s)	inside rSNPs	diseases
11	nsv541068	chr11:65142779-65331136	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	953 gene(s)	inside rSNPs	diseases
12	nsv541069	chr11:65142779-65368787	Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	965 gene(s)	inside rSNPs	diseases
13	nsv541070	chr11:65142779-65397058	Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	972 gene(s)	inside rSNPs	diseases
14	nsv541071	chr11:65142779-65429352	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
15	nsv897719	chr11:65157094-65335705	Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	949 gene(s)	inside rSNPs	diseases
16	nsv541072	chr11:65171202-65313799	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	946 gene(s)	inside rSNPs	diseases
17	nsv541073	chr11:65171202-65331136	Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	949 gene(s)	inside rSNPs	diseases
18	nsv541074	chr11:65171202-65368787	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	961 gene(s)	inside rSNPs	diseases
19	nsv541075	chr11:65210592-65331136	Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	620 gene(s)	inside rSNPs	diseases
20	nsv541076	chr11:65210592-65397058	Flanking Active TSS Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	645 gene(s)	inside rSNPs	diseases
21	nsv897720	chr11:65213434-65445950	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	665 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65245400-65254600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:65245600-65255600	Weak transcription	Gastric	stomach
3	chr11:65246400-65254200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:65246400-65254800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:65247400-65254800	Weak transcription	Spleen	Spleen
6	chr11:65247600-65252600	Weak transcription	Fetal Intestine Small	intestine
7	chr11:65247600-65252600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:65247600-65252800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:65247600-65252800	Weak transcription	Liver	Liver
10	chr11:65247600-65252800	Weak transcription	Brain Germinal Matrix	brain
11	chr11:65247600-65254000	Weak transcription	Psoas Muscle	Psoas
12	chr11:65247600-65254200	Weak transcription	Fetal Intestine Large	intestine
13	chr11:65247800-65252600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:65247800-65252800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:65247800-65253000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:65247800-65253000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr11:65247800-65253400	Weak transcription	Right Ventricle	heart
18	chr11:65247800-65254200	Weak transcription	Fetal Lung	lung
19	chr11:65247800-65254400	Weak transcription	Colonic Mucosa	Colon
20	chr11:65247800-65254400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr11:65248000-65252600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:65249000-65252800	Enhancers	K562	blood
23	chr11:65249200-65252800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr11:65249200-65253000	Weak transcription	Fetal Kidney	kidney
25	chr11:65249200-65253000	Weak transcription	Fetal Stomach	stomach
26	chr11:65249200-65254200	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr11:65249400-65252600	Weak transcription	Fetal Muscle Leg	muscle
28	chr11:65249400-65252800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:65249400-65252800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:65249400-65252800	Weak transcription	Adipose Nuclei	Adipose
31	chr11:65249400-65252800	Weak transcription	Fetal Heart	heart
32	chr11:65249400-65252800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr11:65249400-65253000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:65249400-65253400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:65249400-65254000	Weak transcription	Right Atrium	heart
36	chr11:65249400-65254200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr11:65249400-65254400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:65249400-65254400	Enhancers	Brain Hippocampus Middle	brain
39	chr11:65249800-65252800	Weak transcription	Placenta	Placenta
40	chr11:65250000-65252600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:65250000-65252600	Weak transcription	Brain Substantia Nigra	brain
42	chr11:65250000-65252800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:65250000-65252800	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:65250000-65252800	Weak transcription	HSMM	muscle
45	chr11:65250000-65253400	Weak transcription	Aorta	Aorta
46	chr11:65250000-65253400	Weak transcription	Left Ventricle	heart
47	chr11:65250000-65254000	Weak transcription	HUVEC	blood vessel
48	chr11:65250200-65252600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:65250200-65252800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:65250200-65252800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links