Variant report

Variant	rs35138901
Chromosome Location	chr11:65276823-65276824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65274666..65277195-chr9:131445199..131447270,2	MCF-7	breast:
2	chr11:65274173..65277456-chr11:65317008..65321006,4	K562	blood:
3	chr11:65275164..65278085-chr11:65336005..65340146,5	MCF-7	breast:
4	chr11:65274896..65276870-chr19:55530309..55531921,2	K562	blood:
5	chr11:65273920..65277219-chr11:65354093..65357225,5	K562	blood:
6	chr11:65276130..65278506-chr11:65380000..65382115,2	K562	blood:
7	chr11:65178877..65218546-chr11:65218612..65286191,1014	K562	blood:
8	chr11:65275055..65278736-chr11:65316776..65320237,6	K562	blood:
9	chr11:65162393..65165823-chr11:65272429..65277553,6	K562	blood:
10	chr11:65169505..65171602-chr11:65275535..65277046,2	K562	blood:
11	chr11:65116402..65157784-chr11:65261420..65278410,154	K562	blood:
12	chr11:65081746..65085748-chr11:65275139..65278211,4	K562	blood:
13	chr11:65274736..65277553-chr11:65649720..65652648,2	K562	blood:
14	chr11:65272033..65277611-chr11:65336610..65342921,17	K562	blood:
15	chr10:88514241..88516319-chr11:65275244..65277055,2	K562	blood:
16	chr11:65042439..65045431-chr11:65275213..65278438,3	K562	blood:
17	chr11:65275085..65276943-chr11:65314308..65316784,2	MCF-7	breast:
18	chr11:65083299..65085748-chr11:65275139..65277118,2	K562	blood:
19	chr11:65104784..65106691-chr11:65276749..65278262,2	K562	blood:
20	chr11:65275865..65278342-chr11:65306916..65310717,3	K562	blood:
21	chr11:64983969..64987666-chr11:65274563..65276878,3	K562	blood:
22	chr11:65273543..65277181-chr6:30581393..30584605,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000173825	Chromatin interaction
ENSG00000260233	Chromatin interaction
ENSG00000149798	Chromatin interaction
ENSG00000222894	Chromatin interaction
ENSG00000272631	Chromatin interaction
ENSG00000173327	Chromatin interaction
ENSG00000173465	Chromatin interaction
ENSG00000126391	Chromatin interaction
ENSG00000176973	Chromatin interaction
ENSG00000119335	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000162241	Chromatin interaction
ENSG00000168056	Chromatin interaction
ENSG00000255478	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11545200	0.84[EUR][1000 genomes]
rs11600543	0.96[EUR][1000 genomes]
rs11602375	0.96[EUR][1000 genomes]
rs11604369	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11605810	0.92[EUR][1000 genomes]
rs11605937	0.84[EUR][1000 genomes]
rs1194337	0.98[EUR][1000 genomes]
rs12799784	0.85[EUR][1000 genomes]
rs34789990	0.96[EUR][1000 genomes]
rs36085849	0.83[EUR][1000 genomes]
rs3782089	0.84[EUR][1000 genomes]
rs71462347	0.92[EUR][1000 genomes]
rs7935877	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897715	chr11:65083491-65427346	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
2	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases
3	esv1829999	chr11:65136686-65343124	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	963 gene(s)	inside rSNPs	diseases
4	nsv897717	chr11:65140209-65278461	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	942 gene(s)	inside rSNPs	diseases
5	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
6	nsv541067	chr11:65142779-65313799	Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	950 gene(s)	inside rSNPs	diseases
7	nsv541068	chr11:65142779-65331136	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	953 gene(s)	inside rSNPs	diseases
8	nsv541069	chr11:65142779-65368787	Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	965 gene(s)	inside rSNPs	diseases
9	nsv541070	chr11:65142779-65397058	Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	972 gene(s)	inside rSNPs	diseases
10	nsv541071	chr11:65142779-65429352	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
11	nsv897719	chr11:65157094-65335705	Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	949 gene(s)	inside rSNPs	diseases
12	nsv541072	chr11:65171202-65313799	Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	946 gene(s)	inside rSNPs	diseases
13	nsv541073	chr11:65171202-65331136	Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	949 gene(s)	inside rSNPs	diseases
14	nsv541074	chr11:65171202-65368787	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	961 gene(s)	inside rSNPs	diseases
15	nsv541075	chr11:65210592-65331136	Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	620 gene(s)	inside rSNPs	diseases
16	nsv541076	chr11:65210592-65397058	Flanking Active TSS Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	645 gene(s)	inside rSNPs	diseases
17	nsv897720	chr11:65213434-65445950	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	665 gene(s)	inside rSNPs	diseases
18	nsv555210	chr11:65266169-65287251	Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	574 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65270800-65278200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:65270800-65279800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:65273200-65277000	Weak transcription	Gastric	stomach
4	chr11:65274800-65278200	Weak transcription	Fetal Kidney	kidney
5	chr11:65275200-65278000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:65275200-65278000	Weak transcription	Dnd41	blood
7	chr11:65275200-65283400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:65275200-65283600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:65275200-65289200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:65275400-65277200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:65275400-65277200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:65275400-65278000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:65275400-65278000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:65275400-65278000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:65275400-65278000	Weak transcription	Liver	Liver
16	chr11:65275400-65278000	Weak transcription	Brain Anterior Caudate	brain
17	chr11:65275400-65278000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:65275400-65278200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:65275400-65278200	Weak transcription	Brain Angular Gyrus	brain
20	chr11:65275400-65278200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:65275600-65278000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr11:65275600-65278000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:65275600-65278000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:65275600-65278200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:65275600-65289200	Weak transcription	Fetal Intestine Small	intestine
26	chr11:65275800-65278000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:65276000-65277000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:65276000-65277000	Enhancers	Fetal Muscle Leg	muscle
29	chr11:65276000-65277200	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr11:65276000-65278000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr11:65276200-65277000	Enhancers	Fetal Muscle Trunk	muscle
32	chr11:65276200-65278000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:65276200-65278000	Weak transcription	Primary B cells from cord blood	blood
34	chr11:65276200-65278000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr11:65276200-65278000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr11:65276200-65278000	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr11:65276200-65278000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:65276200-65278000	Weak transcription	K562	blood
39	chr11:65276200-65278200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:65276200-65278200	Weak transcription	HMEC	breast
41	chr11:65276200-65278200	Weak transcription	NHEK	skin
42	chr11:65276200-65283400	Weak transcription	Brain Hippocampus Middle	brain
43	chr11:65276200-65291600	Weak transcription	Right Atrium	heart
44	chr11:65276400-65277000	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr11:65276400-65277200	Weak transcription	HUVEC	blood vessel
46	chr11:65276400-65277200	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr11:65276400-65277400	Enhancers	Placenta	Placenta
48	chr11:65276400-65277800	Weak transcription	Fetal Stomach	stomach
49	chr11:65276400-65278000	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr11:65276400-65278000	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links