Variant report
| Variant | rs11608184 |
|---|---|
| Chromosome Location | chr11:106620010-106620011 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10789540 | 0.92[ASN][1000 genomes] |
| rs10890569 | 0.88[ASN][1000 genomes] |
| rs11604982 | 0.94[ASN][1000 genomes] |
| rs12788085 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12798695 | 0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12800630 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12803679 | 0.94[ASN][1000 genomes] |
| rs1487908 | 0.89[ASN][1000 genomes] |
| rs1565161 | 0.89[ASN][1000 genomes] |
| rs1601806 | 0.88[ASN][1000 genomes] |
| rs17565192 | 0.95[ASN][1000 genomes] |
| rs17649831 | 0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17650551 | 0.97[ASN][1000 genomes] |
| rs2220375 | 0.92[ASN][1000 genomes] |
| rs4121677 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67740566 | 0.94[ASN][1000 genomes] |
| rs67981963 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7103063 | 0.92[ASN][1000 genomes] |
| rs7126017 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7126092 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7129036 | 0.92[ASN][1000 genomes] |
| rs7950329 | 0.94[ASN][1000 genomes] |
| rs7950851 | 0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898359 | chr11:106523574-106656863 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | esv3472163 | chr11:106619338-106622385 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| 3 | esv3472175 | chr11:106619476-106622272 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106552800-106628200 | Weak transcription | Pancreas | Pancrea |
| 2 | chr11:106607800-106629000 | Weak transcription | Fetal Lung | lung |
