Variant report

Variant	rs2220375
Chromosome Location	chr11:106602144-106602145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10789540	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890569	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11604982	0.98[ASN][1000 genomes]
rs11608184	0.92[ASN][1000 genomes]
rs12146527	0.90[EUR][1000 genomes]
rs12788085	0.92[ASN][1000 genomes]
rs12798695	0.92[ASN][1000 genomes]
rs12800630	0.92[ASN][1000 genomes]
rs12803679	0.98[ASN][1000 genomes]
rs1487904	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1487905	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1487906	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1487908	0.94[ASN][1000 genomes]
rs1565161	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1601806	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17565192	0.97[ASN][1000 genomes]
rs17649831	0.92[ASN][1000 genomes]
rs17650551	0.89[ASN][1000 genomes]
rs1938613	0.81[ASN][1000 genomes]
rs1938622	0.90[EUR][1000 genomes]
rs2171459	0.90[EUR][1000 genomes]
rs4121677	0.92[ASN][1000 genomes]
rs67740566	0.98[ASN][1000 genomes]
rs67981963	0.92[ASN][1000 genomes]
rs7103063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126017	0.89[ASN][1000 genomes]
rs7126092	0.89[ASN][1000 genomes]
rs7129036	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950329	0.98[ASN][1000 genomes]
rs7950851	0.95[ASN][1000 genomes]
rs996782	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898359	chr11:106523574-106656863	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106552800-106628200	Weak transcription	Pancreas	Pancrea
2	chr11:106595600-106604800	Weak transcription	Fetal Lung	lung
3	chr11:106595800-106603400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:106600800-106603800	Weak transcription	Fetal Brain Female	brain

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