Variant report

Variant	rs996782
Chromosome Location	chr11:106604810-106604811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10789538	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789539	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10789540	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10890568	0.81[EUR][1000 genomes]
rs10890573	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10890574	0.92[ASN][1000 genomes]
rs10890575	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11211887	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12146527	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12293752	0.89[ASN][1000 genomes]
rs1487903	0.85[EUR][1000 genomes]
rs1487904	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487905	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487906	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1565161	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1843988	0.97[ASN][1000 genomes]
rs1938622	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2171459	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2220375	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2220376	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3763816	0.80[ASN][1000 genomes]
rs3763817	0.97[ASN][1000 genomes]
rs3763818	0.94[ASN][1000 genomes]
rs3858425	0.97[ASN][1000 genomes]
rs4121519	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4754166	0.99[ASN][1000 genomes]
rs7103063	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7129036	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7482785	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7931295	0.99[ASN][1000 genomes]
rs7942149	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898359	chr11:106523574-106656863	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106552800-106628200	Weak transcription	Pancreas	Pancrea
2	chr11:106604200-106605600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:106604400-106605200	Enhancers	Fetal Muscle Leg	muscle
4	chr11:106604400-106605200	Enhancers	Ovary	ovary
5	chr11:106604600-106605000	Enhancers	Colon Smooth Muscle	Colon
6	chr11:106604600-106605200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:106604600-106605200	Enhancers	Fetal Heart	heart
8	chr11:106604800-106605000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:106604800-106605000	Enhancers	Fetal Lung	lung

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