Variant report

Variant	rs12146527
Chromosome Location	chr11:106600913-106600914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10789538	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10789539	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10789540	0.90[EUR][1000 genomes]
rs10890568	0.81[EUR][1000 genomes]
rs10890573	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10890574	0.90[ASN][1000 genomes]
rs10890575	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11211887	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12293752	0.86[ASN][1000 genomes]
rs1487903	0.85[EUR][1000 genomes]
rs1487904	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1487905	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1487906	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1565161	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1843988	0.95[ASN][1000 genomes]
rs1938622	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2171459	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2220375	0.90[EUR][1000 genomes]
rs2220376	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3763817	0.95[ASN][1000 genomes]
rs3763818	0.91[ASN][1000 genomes]
rs3858425	0.95[ASN][1000 genomes]
rs4121519	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4754166	0.96[ASN][1000 genomes]
rs7103063	0.90[EUR][1000 genomes]
rs7129036	0.84[EUR][1000 genomes]
rs7482785	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7931295	0.96[ASN][1000 genomes]
rs7942149	0.91[ASN][1000 genomes]
rs996782	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898359	chr11:106523574-106656863	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106552800-106628200	Weak transcription	Pancreas	Pancrea
2	chr11:106595600-106604800	Weak transcription	Fetal Lung	lung
3	chr11:106595800-106603400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:106600800-106603800	Weak transcription	Fetal Brain Female	brain

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