Variant report
| Variant | rs10890568 |
|---|---|
| Chromosome Location | chr11:106581197-106581198 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10736431 | 0.99[ASN][1000 genomes] |
| rs10890569 | 0.87[EUR][1000 genomes] |
| rs11211878 | 0.84[ASN][1000 genomes] |
| rs11211880 | 0.86[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11211884 | 0.82[ASN][1000 genomes] |
| rs11823116 | 0.83[ASN][1000 genomes] |
| rs12146527 | 0.81[EUR][1000 genomes] |
| rs1487903 | 0.82[ASN][1000 genomes] |
| rs1487904 | 0.81[EUR][1000 genomes] |
| rs1487905 | 0.81[EUR][1000 genomes] |
| rs1487906 | 0.81[EUR][1000 genomes] |
| rs1601806 | 0.88[EUR][1000 genomes] |
| rs1938622 | 0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2171459 | 0.81[EUR][1000 genomes] |
| rs2220376 | 0.82[ASN][1000 genomes] |
| rs3907374 | 0.82[ASN][1000 genomes] |
| rs4121676 | 0.82[ASN][1000 genomes] |
| rs4409792 | 0.99[ASN][1000 genomes] |
| rs4423153 | 0.99[ASN][1000 genomes] |
| rs4528295 | 0.80[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4533009 | 0.99[ASN][1000 genomes] |
| rs6588915 | 0.99[ASN][1000 genomes] |
| rs6588917 | 0.80[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6588921 | 0.82[ASN][1000 genomes] |
| rs7128815 | 0.81[ASN][1000 genomes] |
| rs7933195 | 0.99[ASN][1000 genomes] |
| rs996782 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898359 | chr11:106523574-106656863 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv898360 | chr11:106566114-106598286 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv556229 | chr11:106567017-106582622 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv898361 | chr11:106567910-106598286 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv3327371 | chr11:106579217-106581790 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106552800-106628200 | Weak transcription | Pancreas | Pancrea |
| 2 | chr11:106554800-106585000 | Weak transcription | Fetal Lung | lung |
| 3 | chr11:106577600-106585200 | Weak transcription | NH-A | brain |
