Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10736431	0.82[ASN][1000 genomes]
rs10789538	0.84[EUR][1000 genomes]
rs10789539	0.84[EUR][1000 genomes]
rs10890568	0.82[ASN][1000 genomes]
rs10890573	0.82[EUR][1000 genomes]
rs10890577	0.87[ASN][1000 genomes]
rs11211880	0.81[ASN][1000 genomes]
rs11211884	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11211897	0.97[ASN][1000 genomes]
rs11823116	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1487903	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1938622	0.98[ASN][1000 genomes]
rs2200658	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2220376	0.97[ASN][1000 genomes]
rs4121676	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4409792	0.82[ASN][1000 genomes]
rs4423153	0.82[ASN][1000 genomes]
rs4528295	0.82[ASN][1000 genomes]
rs4533009	0.82[ASN][1000 genomes]
rs6588915	0.82[ASN][1000 genomes]
rs6588919	0.93[ASN][1000 genomes]
rs6588921	0.98[ASN][1000 genomes]
rs7128815	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7933195	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898359	chr11:106523574-106656863	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3472163	chr11:106619338-106622385	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
3	esv3472175	chr11:106619476-106622272	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3907374	MMP20	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106552800-106628200	Weak transcription	Pancreas	Pancrea
2	chr11:106607800-106629000	Weak transcription	Fetal Lung	lung

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