Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10736431	0.82[ASN][1000 genomes]
rs10789538	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10789539	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10890568	0.82[ASN][1000 genomes]
rs10890573	0.81[AMR][1000 genomes]
rs10890577	0.83[ASN][1000 genomes]
rs11211880	0.81[ASN][1000 genomes]
rs11211897	0.95[ASN][1000 genomes]
rs11823116	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1487903	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1938622	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2200658	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2220376	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3907374	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4121676	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4409792	0.82[ASN][1000 genomes]
rs4423153	0.82[ASN][1000 genomes]
rs4528295	0.82[ASN][1000 genomes]
rs4533009	0.82[ASN][1000 genomes]
rs6588915	0.82[ASN][1000 genomes]
rs6588919	0.95[ASN][1000 genomes]
rs6588921	0.97[ASN][1000 genomes]
rs7128815	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7933195	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898359	chr11:106523574-106656863	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv898360	chr11:106566114-106598286	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv898361	chr11:106567910-106598286	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11211884	MMP20	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106552800-106628200	Weak transcription	Pancreas	Pancrea
2	chr11:106583600-106598000	Weak transcription	Fetal Brain Male	brain
3	chr11:106595600-106604800	Weak transcription	Fetal Lung	lung
4	chr11:106595800-106603400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: