Variant report
| Variant | rs4121676 |
|---|---|
| Chromosome Location | chr11:106611905-106611906 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10736431 | 0.81[ASN][1000 genomes] |
| rs10789538 | 0.80[AMR][1000 genomes] |
| rs10789539 | 0.81[AMR][1000 genomes] |
| rs10890568 | 0.82[ASN][1000 genomes] |
| rs10890573 | 0.80[AMR][1000 genomes] |
| rs10890577 | 0.84[ASN][1000 genomes] |
| rs11211880 | 0.80[ASN][1000 genomes] |
| rs11211884 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11211887 | 0.80[EUR][1000 genomes] |
| rs11211897 | 0.96[ASN][1000 genomes] |
| rs11823116 | 0.90[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1487903 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1938622 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2200658 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2220376 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3907374 | 0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4409792 | 0.81[ASN][1000 genomes] |
| rs4423153 | 0.81[ASN][1000 genomes] |
| rs4528295 | 0.81[ASN][1000 genomes] |
| rs4533009 | 0.81[ASN][1000 genomes] |
| rs6588915 | 0.81[ASN][1000 genomes] |
| rs6588919 | 0.94[ASN][1000 genomes] |
| rs6588921 | 0.97[ASN][1000 genomes] |
| rs7128815 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7482785 | 0.80[EUR][1000 genomes] |
| rs7933195 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv898359 | chr11:106523574-106656863 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4121676 | MMP20 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106552800-106628200 | Weak transcription | Pancreas | Pancrea |
| 2 | chr11:106607800-106629000 | Weak transcription | Fetal Lung | lung |
