Variant report

Variant	rs6588919
Chromosome Location	chr11:106590976-106590977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10890577	0.81[ASN][1000 genomes]
rs11211884	0.95[ASN][1000 genomes]
rs11211897	0.90[ASN][1000 genomes]
rs11823116	0.96[ASN][1000 genomes]
rs1487903	0.95[ASN][1000 genomes]
rs1843988	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1938622	0.95[ASN][1000 genomes]
rs2200658	0.91[ASN][1000 genomes]
rs2220376	0.94[ASN][1000 genomes]
rs3907374	0.93[ASN][1000 genomes]
rs4121676	0.94[ASN][1000 genomes]
rs4409792	0.80[EUR][1000 genomes]
rs4423153	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4533009	0.80[EUR][1000 genomes]
rs4754166	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6588921	0.93[ASN][1000 genomes]
rs7128815	0.93[ASN][1000 genomes]
rs7931295	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7933195	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898359	chr11:106523574-106656863	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv898360	chr11:106566114-106598286	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv898361	chr11:106567910-106598286	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106552800-106628200	Weak transcription	Pancreas	Pancrea
2	chr11:106583400-106595800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:106583600-106598000	Weak transcription	Fetal Brain Male	brain
4	chr11:106589600-106595000	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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